Browse Element(s) Details


OsAffx.28278.1.S1_at

Description tigr:9635.m00440
TID=OsAffx.28278.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0507010/11hypothetical protein
LOC_Os02g283501/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05010Os.44516.1.S1_x_at11/117+2205388..2209022Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g05010OsAffx.5214.1.S1_x_at11/117+2205388..2209022Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g05010Os.15089.1.S1_at11/117+2205388..2209022Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g05010OsAffx.5214.1.S1_at10/117+2205388..2209022Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g05020OsAffx.22498.1.S1_at9/117+2210901..2213778expressed protein
LOC_Os07g05020OsAffx.10665.1.S1_x_at1/117+2210901..2213778expressed protein
LOC_Os07g05020Os.55138.1.S1_x_at1/117+2210901..2213778expressed protein
LOC_Os07g05020OsAffx.10665.2.S1_at1/117+2210901..2213778expressed protein
LOC_Os07g05020OsAffx.20707.2.S1_x_at1/117+2210901..2213778expressed protein
LOC_Os07g05020Os.55476.1.S1_at1/117+2210901..2213778expressed protein
LOC_Os07g05030OsAffx.28277.1.S1_at10/117+2216587..2217757hypothetical protein
LOC_Os07g05040Os.5363.1.S1_at11/117+2221229..2223216cadmium-induced protein, putative, expressed
LOC_Os07g05050Os.38341.1.S1_at11/117+2223931..2229407DEAD/DEAH box helicase family protein, expressed
LOC_Os07g05050Os.38341.1.S1_x_at11/117+2223931..2229407DEAD/DEAH box helicase family protein, expressed
LOC_Os07g05060Os.35959.1.S1_at10/117+2230274..2232730expressed protein
LOC_Os07g05070OsAffx.28278.1.S1_at10/117+2233716..2234318hypothetical protein
LOC_Os07g05084OsAffx.1499.1.S1_at11/117+2241974..2243857expressed protein
LOC_Os07g05100OsAffx.16092.1.S1_at11/117+2251212..2252853hypothetical protein
LOC_Os07g05110Os.18494.1.S1_at10/117+2255620..2257435Patatin-like phospholipase family protein, expressed
LOC_Os07g05120OsAffx.28280.1.S1_at11/117+2257844..2259856hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28278.1.S1_at--1083--4091Chr07:2234262..2234286 (25 bp)
CGACGGAGATGGAAATCAGCAGCAT
LOC_Os07g05070
OsAffx.28278.1.S1_at--539--8051Chr07:2234258..2234282 (25 bp)
GGAGATGGAAATCAGCAGCATATGC
LOC_Os07g05070
OsAffx.28278.1.S1_at--817--4952Chr02:16753205..16753236 (25 bp)
GCATATGCGATGGAGACTACTGGAA
LOC_Os02g28350
OsAffx.28278.1.S1_at--79--1411Chr07:2234228..2234252 (25 bp)
AGACTACTGGAAATCAGCAGCGGAC
LOC_Os07g05070
OsAffx.28278.1.S1_at--412--3071Chr07:2234217..2234241 (25 bp)
AATCAGCAGCGGACGTACGGTGGCA
LOC_Os07g05070
OsAffx.28278.1.S1_at--515--3411Chr07:2234215..2234238 (24 bp)
CAGCAGCGGACGTACGGTGGCAACC
LOC_Os07g05070
OsAffx.28278.1.S1_at--832--1771NONE
ACCGGTGGCGCGAAGTTATGGATCT
NONE
OsAffx.28278.1.S1_at--1091--8391Chr07:2234125..2234149 (25 bp)
GGCGCGAAGTTATGGATCTTCAACA
LOC_Os07g05070
OsAffx.28278.1.S1_at--1079--431Chr07:2234110..2234134 (25 bp)
ATCTTCAACAACTGCGACGTGAGAG
LOC_Os07g05070
OsAffx.28278.1.S1_at--546--5651Chr07:2234079..2234103 (25 bp)
GACAGAGAGGGAGCGCTGGTGCGAA
LOC_Os07g05070
OsAffx.28278.1.S1_at--315--2931Chr07:2234040..2234062 (23 bp)
AAGGACGGCGACACAGAGGGAGAAA
LOC_Os07g05070
Target Sequence 
CGACGGAGATGGAAATCAGCAGCATATGCGATGGAGACTACTGGAAATCAGCAGCGGACGTACGGTGGCAACCGGTGGCG
CGAAGTTATGGATCTTCAACAACTGCGACGTGAGAGGAGTGCGACAGAGAGGGAGCGCTGGTGCGAAGAGGGGTGGAAAA
GAAAAGGACGGCGACACAGAGGGAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28278.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis