Browse Element(s) Details


OsAffx.28325.1.S1_x_at

Description tigr:9635.m00688
TID=OsAffx.28325.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0742011/11Gibberellin 20 oxidase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07350Os.51482.1.S1_at11/117+3674265..3676709Zinc finger A20 and AN1 domains containing protein At2g36320, putative, expressed
LOC_Os07g07350Os.6805.1.A1_at11/117+3674265..3676709Zinc finger A20 and AN1 domains containing protein At2g36320, putative, expressed
LOC_Os07g07360OsAffx.28323.1.S1_at10/117+3679836..3682617hypothetical protein
LOC_Os07g07360OsAffx.3376.1.S1_at1/117+3679836..3682617hypothetical protein
LOC_Os07g07370NANA7+3683751..3683966A20-like zinc finger family protein
LOC_Os07g07380OsAffx.28324.1.S1_at11/117+3686657..3687025hypothetical protein
LOC_Os07g07390OsAffx.12670.1.S1_at1/117+3688467..3690622Calcium binding EGF domain containing protein
LOC_Os07g07400OsAffx.16134.1.S1_at11/117+3696970..3697428AN1-like Zinc finger family protein
LOC_Os07g07410Os.18299.1.S1_at11/117+3697927..3699859oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os07g07420OsAffx.28325.1.S1_x_at11/117+3700646..3703223Gibberellin 20 oxidase 1, putative, expressed
LOC_Os07g07420OsAffx.28325.1.S1_at11/117+3700646..3703223Gibberellin 20 oxidase 1, putative, expressed
LOC_Os07g07430OsAffx.5240.1.S1_at11/117+3705107..3706216CAF1 family ribonuclease containing protein
LOC_Os07g07440NANA7+3710210..3710995NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g07450OsAffx.16135.1.S1_x_at11/117+3711595..3712392NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g07460NANA7+3715579..3715788hypothetical protein
LOC_Os07g07470Os.11982.1.S1_at11/117+3717004..37209512-oxoisovalerate dehydrogenase beta subunit, mitochondrial precursor, putative, expressed
LOC_Os07g07480Os.21088.1.S1_at11/117+3722746..3724736HNH endonuclease domain-containing protein, putative, expressed
LOC_Os07g07480OsAffx.22147.1.S1_x_at2/117+3722746..3724736HNH endonuclease domain-containing protein, putative, expressed
LOC_Os07g07490Os.8783.1.S1_at11/117+3724983..3729461YT521-B-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007623biological_processcircadian rhythm
GO:0009639biological_processresponse to red or far red light
GO:0009686biological_processgibberellic acid biosynthesis
GO:0009739biological_processresponse to gibberellic acid stimulus
GO:0009740biological_processgibberellic acid mediated signaling
GO:0005737cellular_componentcytoplasm
GO:0016707molecular_functiongibberellin 3-beta-dioxygenase activity
GO:0045544molecular_functiongibberellin 20-oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28325.1.S1_x_at--226--8871Chr07:3702350..3702374 (25 bp)
TGATGACGCGGCTGGCGCTGGACGT
LOC_Os07g07420
OsAffx.28325.1.S1_x_at--96--4611Chr07:3702440..3702464 (25 bp)
GCGACCCGGTGATGCGGCTGAACCA
LOC_Os07g07420
OsAffx.28325.1.S1_x_at--399--491Chr07:3702646..3702670 (25 bp)
ATCGGCGACACGTTCGCGGCGCTCA
LOC_Os07g07420
OsAffx.28325.1.S1_x_at--141--8131Chr07:3702822..3702846 (25 bp)
GGACTTCACGTGGCGCGAGTTCCTC
LOC_Os07g07420
OsAffx.28325.1.S1_x_at--1152--6051Chr07:3702838..3702862 (25 bp)
GAGTTCCTCGAGTTCACGCAGAGGC
LOC_Os07g07420
OsAffx.28325.1.S1_x_at--512--6691Chr07:3702840..3702864 (25 bp)
GTTCCTCGAGTTCACGCAGAGGCAC
LOC_Os07g07420
OsAffx.28325.1.S1_x_at--993--9371Chr07:3702845..3702869 (25 bp)
TCGAGTTCACGCAGAGGCACTACCG
LOC_Os07g07420
OsAffx.28325.1.S1_x_at--500--6071Chr07:3702847..3702871 (25 bp)
GAGTTCACGCAGAGGCACTACCGGT
LOC_Os07g07420
OsAffx.28325.1.S1_x_at--33--9691Chr07:3702851..3702875 (25 bp)
TCACGCAGAGGCACTACCGGTCGGA
LOC_Os07g07420
OsAffx.28325.1.S1_x_at--196--1851Chr07:3702853..3702877 (25 bp)
ACGCAGAGGCACTACCGGTCGGACA
LOC_Os07g07420
OsAffx.28325.1.S1_x_at--458--931Chr07:3702859..3702883 (25 bp)
AGGCACTACCGGTCGGACACCAACA
LOC_Os07g07420
Target Sequence 
TGATGACGCGGCTGGCGCTGGACGTGACGGAGGTGCTCGCGGTGGCGCTCGGGCTCGGCCGCGGCGAGCTCCGCGGCTTC
TTCGCCGACGGCGACCCGGTGATGCGGCTGAACCACTACCCGCCGTGCCGGCAGCCGCACCTGACGCTGGGCACGGGCCC
GCACCGCGACCCGACGTCGCTGACGCTGCTCCACCAGGACGACGTCGGCGGCCTGCAGGTGCTCCCCGACGACGCCGCGG
CGGCGGCGGGCGGGTGGCGCGCCGTGCGCCCGCGCGCCGACGCGTTCGTCGTCAACATCGGCGACACGTTCGCGGCGCTC
ACCAACGGGCGCCACGCCAGCTGCCTCCACCGCGCCGTGGTGAACGGCCGCGTCGCGCGCAGGTCGCTCACCTTCTTCCT
CAACCCGCGCCTCGACCGCGTCGTGTCGCCGCCGCCGGCGCTCGTCGACGCCGCGCACCCGCGCGCGTTCCCGGACTTCA
CGTGGCGCGAGTTCCTCGAGTTCACGCAGAGGCACTACCGGTCGGACACCAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28325.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis