Browse Element(s) Details


OsAffx.28472.1.A1_x_at

Description tigr:9632.m00132
TID=OsAffx.28472.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2451910/11hypothetical protein
LOC_Os06g2623410/11Alpha amylase, catalytic domain containing protein, expressed
LOC_Os03g336001/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g24480OsAffx.19802.1.S1_at11/1112+13974921..13977301hypothetical protein
LOC_Os12g24480OsAffx.13388.1.S1_at1/1112+13974921..13977301hypothetical protein
LOC_Os12g24490Os.55823.1.S1_at11/1112+13979331..13980242Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g24500OsAffx.19803.1.S1_at11/1112+13983746..13988422expressed protein
LOC_Os12g24500Os.32374.2.S1_x_at1/1112+13983746..13988422expressed protein
LOC_Os12g24500Os.32374.3.S1_x_at1/1112+13983746..13988422expressed protein
LOC_Os12g24510NANA12+13988934..13992563retrotransposon protein, putative, unclassified
LOC_Os12g24519OsAffx.28472.1.A1_x_at10/1112+13995152..13996126hypothetical protein
LOC_Os12g24530OsAffx.7687.1.S1_at11/1112+14007356..14007994Zinc finger, C3HC4 type family protein
LOC_Os12g24540OsAffx.7688.1.S1_at11/1112+14010291..14016381PHD-finger family protein, expressed
LOC_Os12g24540Os.50817.1.S1_x_at11/1112+14010291..14016381PHD-finger family protein, expressed
LOC_Os12g24540Os.50817.1.S1_at11/1112+14010291..14016381PHD-finger family protein, expressed
LOC_Os12g24540Os.23856.1.A1_s_at11/1112+14010291..14016381PHD-finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0010021biological_processamylopectin biosynthesis
GO:0003844molecular_function1,4-alpha-glucan branching enzyme activity
GO:0004556molecular_functionalpha-amylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28472.1.A1_x_at--3--39121Chr08:18047869..18047893 (25 bp)
CGGCCTGTTGGGCCTCCTTGATGCC
NONE
OsAffx.28472.1.A1_x_at--800--84122Chr08:18047870..18047894 (25 bp)
GGCCTGTTGGGCCTCCTTGATGCCG
NONE
OsAffx.28472.1.A1_x_at--652--44722Chr08:18047871..18047895 (25 bp)
GCCTGTTGGGCCTCCTTGATGCCGA
NONE
OsAffx.28472.1.A1_x_at--242--42721Chr08:18047872..18047896 (25 bp)
CCTGTTGGGCCTCCTTGATGCCGAA
NONE
OsAffx.28472.1.A1_x_at--123--38720Chr08:18047873..18047897 (25 bp)
CTGTTGGGCCTCCTTGATGCCGAAC
NONE
OsAffx.28472.1.A1_x_at--74--88320Chr08:18047874..18047898 (25 bp)
TGTTGGGCCTCCTTGATGCCGAACT
NONE
OsAffx.28472.1.A1_x_at--353--66321Chr08:18047875..18047899 (25 bp)
GTTGGGCCTCCTTGATGCCGAACTC
NONE
OsAffx.28472.1.A1_x_at--489--108318Chr08:18047876..18047900 (25 bp)
TTGGGCCTCCTTGATGCCGAACTCG
NONE
OsAffx.28472.1.A1_x_at--293--86519Chr08:18047877..18047901 (25 bp)
TGGGCCTCCTTGATGCCGAACTCGT
NONE
OsAffx.28472.1.A1_x_at--1133--74720Chr08:18047878..18047902 (25 bp)
GGGCCTCCTTGATGCCGAACTCGTC
NONE
Target Sequence 
CGGCCTGTTGGGCCTCCTTGATGCCGAACTCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28472.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis