Browse Element(s) Details


OsAffx.28610.5.S1_x_at

Description tigr:9635.m02589
TID=OsAffx.28610.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2686011/11hypothetical protein
LOC_Os01g532942/11NADPH oxidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26820NANA7+15515034..15516542retrotransposon protein, putative, unclassified
LOC_Os07g26830Os.52731.1.S1_at2/117+15521797..15525565retrotransposon protein, putative, unclassified
LOC_Os07g26830OsAffx.22699.1.S1_x_at1/117+15521797..15525565retrotransposon protein, putative, unclassified
LOC_Os07g26840Os.27066.1.A1_x_at4/117+15525954..15529101hypothetical protein
LOC_Os07g26850NANA7+15532536..15533018retrotransposon protein, putative, unclassified
LOC_Os07g26860OsAffx.28610.5.S1_at11/117+15541009..15544183hypothetical protein
LOC_Os07g26860OsAffx.28610.5.S1_x_at11/117+15541009..15544183hypothetical protein
LOC_Os07g26860OsAffx.28610.4.S1_s_at11/117+15541009..15544183hypothetical protein
LOC_Os07g26860OsAffx.28610.2.S1_at10/117+15541009..15544183hypothetical protein
LOC_Os07g26860OsAffx.28610.2.S1_x_at9/117+15541009..15544183hypothetical protein
LOC_Os07g26860OsAffx.28610.1.S1_at7/117+15541009..15544183hypothetical protein
LOC_Os07g26860OsAffx.28610.1.S1_x_at6/117+15541009..15544183hypothetical protein
LOC_Os07g26860OsAffx.28610.4.S1_x_at2/117+15541009..15544183hypothetical protein
LOC_Os07g26860OsAffx.28610.3.S1_at2/117+15541009..15544183hypothetical protein
LOC_Os07g26860Os.4760.1.S1_at1/117+15541009..15544183hypothetical protein
LOC_Os07g26870Os.28495.1.S1_at11/117+15558647..15560238Cytochrome P450 family protein, expressed
LOC_Os07g26880OsAffx.16430.2.S1_s_at11/117+15564784..15565477hypothetical protein
LOC_Os07g26880OsAffx.16430.2.S1_at11/117+15564784..15565477hypothetical protein
LOC_Os07g26880OsAffx.16430.1.S1_at4/117+15564784..15565477hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006800biological_processoxygen and reactive oxygen species metabolism
GO:0006952biological_processdefense response
GO:0009060biological_processaerobic respiration
GO:0009738biological_processabscisic acid mediated signaling
GO:0010053biological_processroot epidermal cell differentiation
GO:0043069biological_processnegative regulation of programmed cell death
GO:0005887cellular_componentintegral to plasma membrane
GO:0016174molecular_functionNAD(P)H oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28610.5.S1_x_at--772--3812Chr07:15542576..15542600 (25 bp)
CTGCTTTAAACCAAAACAGAAATCA
LOC_Os07g26860
OsAffx.28610.5.S1_x_at--789--10295Chr10:12142196..12142220 (25 bp)
TTTCGAAATTGAATTCCAGCCGGGT
NONE
OsAffx.28610.5.S1_x_at--886--9355Chr10:12142198..12142222 (25 bp)
TCGAAATTGAATTCCAGCCGGGTCC
NONE
OsAffx.28610.5.S1_x_at--930--4074Chr10:12142199..12142223 (25 bp)
CGAAATTGAATTCCAGCCGGGTCCA
NONE
OsAffx.28610.5.S1_x_at--1097--5594Chr10:12142200..12142224 (25 bp)
GAAATTGAATTCCAGCCGGGTCCAC
NONE
OsAffx.28610.5.S1_x_at--982--2234Chr10:12142201..12142225 (25 bp)
AAATTGAATTCCAGCCGGGTCCACA
NONE
OsAffx.28610.5.S1_x_at--394--3174Chr10:12142202..12142226 (25 bp)
AATTGAATTCCAGCCGGGTCCACAG
NONE
OsAffx.28610.5.S1_x_at--816--3156Chr10:12142207..12142227 (21 bp)
AATTCCAGCCGGGTCCACAGGGTGC
NONE
OsAffx.28610.5.S1_x_at--1074--10676Chr10:12142209..12142679 (25 bp)
TTCCAGCCGGGTCCACAGGGTGCTC
NONE
OsAffx.28610.5.S1_x_at--1095--6631Chr07:15543161..15543185 (25 bp)
GTTGTTGGCCCACGGCGGCAAAAAT
LOC_Os07g26860
OsAffx.28610.5.S1_x_at--379--2831Chr07:15543435..15543459 (25 bp)
AAGTACATTGGCTTGGTGTTGCTTC
LOC_Os07g26860
Target Sequence 
CTGCTTTAAACCAAAACAGAAATCAATTTTCGAAATTGAATTCCAGCCGGGTCCACAGGGTGCTCACCAAGCAGAGAAAC
GGAGGCAGCGAGGTCCAGGGAGCGGCGGAGACGGTGGTTGTTGGCCCACGGCGGCAAAAATCCGGCGTCGACGTCGCCGG
GTCGACTCAAGGCGCGAACTGCAACTTCGAGAGTACGGGGCTGTTAGAGATGAGCCACAGAGAGTGCATGCGCGAGAAAT
CCGGCGGAAACTCACCGGAGCGGGAGGATTCGCCGGCGGCGGCGGATGGCCGAAAAGGGGGAGGGGGCGGCGACGTTCCG
GCGGTGCAGAGTGCGTCGGCTCGATCGGCTTCAGTCGAACCTCGATGGGGTCGAGGCGAGCTTGCAGACGAAGTACATTG
GCTTGGTGTTGCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28610.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis