Browse Element(s) Details


OsAffx.28843.1.S1_at

Description tigr:9635.m04029
TID=OsAffx.28843.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4034011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40310Os.51678.1.S1_at11/117+24170450..24173716hypothetical protein
LOC_Os07g40310Os.7030.1.S1_s_at11/117+24170450..24173716hypothetical protein
LOC_Os07g40310OsAffx.16651.1.S1_at7/117+24170450..24173716hypothetical protein
LOC_Os07g40320Os.11008.1.S1_at11/117+24175707..24181143Got1-like family protein, expressed
LOC_Os07g40320Os.40002.1.S1_s_at4/117+24175707..24181143Got1-like family protein, expressed
LOC_Os07g40320OsAffx.5584.1.S1_at3/117+24175707..24181143Got1-like family protein, expressed
LOC_Os07g40330NANA7+24182336..24185029hypothetical protein
LOC_Os07g40340OsAffx.28843.1.S1_x_at11/117+24192928..24193296hypothetical protein
LOC_Os07g40340OsAffx.28843.1.S1_at11/117+24192928..24193296hypothetical protein
LOC_Os07g40350NANA7+24194665..24198239transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g40360OsAffx.17678.1.S1_at1/117+24198440..24200433transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g40370OsAffx.28844.1.S1_at11/117+24204288..24206270hypothetical protein
LOC_Os07g40370OsAffx.30648.1.S1_at2/117+24204288..24206270hypothetical protein
LOC_Os07g40380OsAffx.16652.1.S1_at11/117+24209326..24210783hypothetical protein
LOC_Os07g40390Os.40388.2.S1_s_at8/117+24214183..24216169hypothetical protein
LOC_Os07g40390Os.46392.1.S1_s_at8/117+24214183..24216169hypothetical protein
LOC_Os07g40390Os.40388.2.S1_x_at3/117+24214183..24216169hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28843.1.S1_at--114--3831Chr07:24193204..24193228 (25 bp)
CTGCGGCGGTTGCAGGCGACGAGAT
LOC_Os07g40340
OsAffx.28843.1.S1_at--1154--6651Chr07:24193196..24193220 (25 bp)
GTTGCAGGCGACGAGATGGCTGCGG
LOC_Os07g40340
OsAffx.28843.1.S1_at--1086--8411Chr07:24193151..24193175 (25 bp)
GGCCGAGGATGCAAGCAATGGCGAC
LOC_Os07g40340
OsAffx.28843.1.S1_at--118--8531Chr07:24193112..24193136 (25 bp)
TGGACGAGAGCCACAACTGCGCGGA
LOC_Os07g40340
OsAffx.28843.1.S1_at--142--2211Chr07:24193100..24193124 (25 bp)
ACAACTGCGCGGACGTGGGTGGCGA
LOC_Os07g40340
OsAffx.28843.1.S1_at--948--1691Chr07:24193049..24193073 (25 bp)
AGCCACGACTGAGGATGCAAGCGAC
LOC_Os07g40340
OsAffx.28843.1.S1_at--636--4411Chr07:24193048..24193072 (25 bp)
GCCACGACTGAGGATGCAAGCGACG
LOC_Os07g40340
OsAffx.28843.1.S1_at--118--4371Chr07:24193047..24193071 (25 bp)
CCACGACTGAGGATGCAAGCGACGG
LOC_Os07g40340
OsAffx.28843.1.S1_at--1078--1851Chr07:24193045..24193069 (25 bp)
ACGACTGAGGATGCAAGCGACGGCA
LOC_Os07g40340
OsAffx.28843.1.S1_at--720--1971Chr07:24193042..24193066 (25 bp)
ACTGAGGATGCAAGCGACGGCACGA
LOC_Os07g40340
OsAffx.28843.1.S1_at--1042--3851Chr07:24193041..24193065 (25 bp)
CTGAGGATGCAAGCGACGGCACGAC
LOC_Os07g40340
Target Sequence 
CTGCGGCGGTTGCAGGCGACGAGATGGCTGCGGCCGCGGTGGACGAGAGCCACGGCCGAGGATGCAAGCAATGGCGACGG
GGATGGCCGGGGTGGACGAGAGCCACAACTGCGCGGACGTGGGTGGCGATGATGGCTGCGACTGCGGTGGACGAGAGCCA
CGACTGAGGATGCAAGCGACGGCACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28843.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis