Browse Element(s) Details


OsAffx.28851.1.S1_s_at

Description tigr:9635.m04104
TID=OsAffx.28851.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4105011/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41000OsAffx.28850.1.S1_at11/117+24530448..24530651hypothetical protein
LOC_Os07g41014OsAffx.21870.3.S1_x_at11/117+24532679..24538416Glycosyl hydrolases family 17 protein
LOC_Os07g41014OsAffx.22670.1.S1_s_at11/117+24532679..24538416Glycosyl hydrolases family 17 protein
LOC_Os07g41014OsAffx.21870.2.S1_x_at11/117+24532679..24538416Glycosyl hydrolases family 17 protein
LOC_Os07g41014OsAffx.22670.2.S1_at11/117+24532679..24538416Glycosyl hydrolases family 17 protein
LOC_Os07g41014OsAffx.30361.1.S1_at1/117+24532679..24538416Glycosyl hydrolases family 17 protein
LOC_Os07g41030NANA7+24541477..24543148retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g41050OsAffx.28851.1.S1_s_at11/117+24553475..24555029NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g41060Os.54545.1.S1_at11/117+24557880..24562243Dihydroflavonol-4-reductase, putative, expressed
LOC_Os07g41060OsAffx.28164.2.S1_at1/117+24557880..24562243Dihydroflavonol-4-reductase, putative, expressed
LOC_Os07g41060Os.46481.2.S1_x_at1/117+24557880..24562243Dihydroflavonol-4-reductase, putative, expressed
LOC_Os07g41070Os.12775.1.S1_at9/117+24565848..24568623NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g41080OsAffx.16668.1.S1_at11/117+24573467..24582564hydrolase, alpha/beta fold family protein
LOC_Os07g41080Os.25481.1.S1_at11/117+24573467..24582564hydrolase, alpha/beta fold family protein
LOC_Os07g41080OsAffx.3237.1.S1_at4/117+24573467..24582564hydrolase, alpha/beta fold family protein
LOC_Os07g41080OsAffx.24649.2.S1_x_at2/117+24573467..24582564hydrolase, alpha/beta fold family protein
LOC_Os07g41080Os.54545.1.S1_at1/117+24573467..24582564hydrolase, alpha/beta fold family protein

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Gene Ontology Classification
GO idTypeName
GO:0010051biological_processvascular tissue pattern formation (sensu Tracheophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28851.1.S1_s_at--747--7891Chr07:24554641..24554665 (25 bp)
GGTTCCGGAACACGCTCAGGTCGTT
LOC_Os07g41050
OsAffx.28851.1.S1_s_at--1084--5391Chr07:24554687..24554711 (25 bp)
GAAGCTTTACAGGATTGTTCCTTGA
LOC_Os07g41050
OsAffx.28851.1.S1_s_at--770--10351Chr07:24554716..24554740 (25 bp)
TTTATCTCAGGTTTCTCCTCAATCT
LOC_Os07g41050
OsAffx.28851.1.S1_s_at--650--10591Chr07:24554728..24554752 (25 bp)
TTCTCCTCAATCTCTCGTGGATTAA
LOC_Os07g41050
OsAffx.28851.1.S1_s_at--775--7011Chr07:24554837..24554861 (25 bp)
GTACATCGGTCTAATACGGTGGCCT
LOC_Os07g41050
OsAffx.28851.1.S1_s_at--854--7791Chr07:24554844..24554868 (25 bp)
GGTCTAATACGGTGGCCTCGGGCAA
LOC_Os07g41050
OsAffx.28851.1.S1_s_at--537--10251Chr07:24554878..24554902 (25 bp)
TTTGTGGTGTTCTCTCTGGTCATGC
LOC_Os07g41050
OsAffx.28851.1.S1_s_at--335--10591Chr07:24554887..24554911 (25 bp)
TTCTCTCTGGTCATGCATGGTCAAT
LOC_Os07g41050
OsAffx.28851.1.S1_s_at--638--631Chr07:24554899..24554923 (25 bp)
ATGCATGGTCAATGCTTCCAGGCTT
LOC_Os07g41050
OsAffx.28851.1.S1_s_at--891--911Chr07:24554918..24554942 (25 bp)
AGGCTTCCAGCGTCAAATCATTTTG
LOC_Os07g41050
OsAffx.28851.1.S1_s_at--189--2591Chr07:24554968..24554992 (25 bp)
AACGTTTTGCTGTACATTTGTCCAT
LOC_Os07g41050
Target Sequence 
GGTTCCGGAACACGCTCAGGTCGTTCGAGGCGTGGATCGACAAGATGAAGCTTTACAGGATTGTTCCTTGATTAATTTAT
CTCAGGTTTCTCCTCAATCTCTCGTGGATTAATAATTATACCATTAGATCCGTTAAAATATAATAATTTTTAGCTATAAA
TCTGAACAAATAAAATATTTATATTTTAGGACGAAAGTACATCGGTCTAATACGGTGGCCTCGGGCAACCAAAGTAGTTT
GTGGTGTTCTCTCTGGTCATGCATGGTCAATGCTTCCAGGCTTCCAGCGTCAAATCATTTTGACCAAAAGGGGTTAATGG
TTTGTAAAACGTTTTGCTGTACATTTGTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28851.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis