Browse Element(s) Details


OsAffx.28952.1.S1_x_at

Description tigr:9635.m04887
TID=OsAffx.28952.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4842011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48410Os.4796.1.S2_at11/117+28926985..28931273RNA recognition motif family protein, expressed
LOC_Os07g48410Os.4796.1.S1_at11/117+28926985..28931273RNA recognition motif family protein, expressed
LOC_Os07g48420OsAffx.28952.1.S1_x_at11/117+28955289..28959135expressed protein
LOC_Os07g48420Os.16088.1.S1_x_at11/117+28955289..28959135expressed protein
LOC_Os07g48420Os.16088.2.S1_at11/117+28955289..28959135expressed protein
LOC_Os07g48430Os.26730.1.S1_at11/117+28961334..28965586Nucleoside-triphosphatase, putative, expressed
LOC_Os07g48440OsAffx.28970.4.S1_at11/117+28966181..28966771hypothetical protein
LOC_Os07g48440OsAffx.28970.1.S1_x_at3/117+28966181..28966771hypothetical protein
LOC_Os07g48440OsAffx.28970.3.S1_x_at1/117+28966181..28966771hypothetical protein
LOC_Os07g48440OsAffx.28970.1.S1_at1/117+28966181..28966771hypothetical protein
LOC_Os07g48450Os.18595.1.A1_at11/117+28984109..28986260NAC-domain containing protein 18, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28952.1.S1_x_at--585--7151Chr07:28956828..28956852 (25 bp)
GTCTATGTCTGTGAACGTGCTTTTT
LOC_Os07g48420
OsAffx.28952.1.S1_x_at--848--6591Chr07:28956812..28956836 (25 bp)
GTGCTTTTTTAATACCCTATACTCT
LOC_Os07g48420
OsAffx.28952.1.S1_x_at--961--10351Chr07:28956785..28956809 (25 bp)
TTTTTATCGCTCCATTTTACTCCTA
LOC_Os07g48420
OsAffx.28952.1.S1_x_at--752--2671Chr07:28956681..28956705 (25 bp)
AAGCGGCAGCAGATAGACCATCAAT
LOC_Os07g48420
OsAffx.28952.1.S1_x_at--560--371Chr07:28956662..28956686 (25 bp)
ATCAATGCATTTGCCGCACCTATCG
LOC_Os07g48420
OsAffx.28952.1.S1_x_at--253--3691Chr07:28956643..28956667 (25 bp)
CTATCGTACCTCCTTAGTTGTTTGA
LOC_Os07g48420
OsAffx.28952.1.S1_x_at--338--6011Chr07:28956554..28956578 (25 bp)
GAGAGCTTGGCATTATCTTTGAAAT
LOC_Os07g48420
OsAffx.28952.1.S1_x_at--258--8791Chr07:28956426..28956450 (25 bp)
TGTTAACCTATCTAGCTACTTCCCA
LOC_Os07g48420
OsAffx.28952.1.S1_x_at--833--10411Chr07:28956362..28956386 (25 bp)
TTATATTGTTCTTGGCCTCATGGGT
LOC_Os07g48420
OsAffx.28952.1.S1_x_at--1005--4291Chr07:28956347..28956371 (25 bp)
CCTCATGGGTGGCTGATGACGATCA
LOC_Os07g48420
OsAffx.28952.1.S1_x_at--77--10351Chr07:28956288..28956312 (25 bp)
TTTTTCCCCTTGCAAACGATAGAAT
LOC_Os07g48420
Target Sequence 
GTCTATGTCTGTGAACGTGCTTTTTTAATACCCTATACTCTTATTTTTATCGCTCCATTTTACTCCTATTTGTGTACTGT
TGAATGTGTGTCATGGTCGGTACACATGTAGTTGAAGTGCTAAGGATGGCGCACAGGGGGCAGAACCAAGCGGCAGCAGA
TAGACCATCAATGCATTTGCCGCACCTATCGTACCTCCTTAGTTGTTTGATTCAATTTGTTTAGGTTGAGATTTGTTAAA
CTTTTTAGGTTTGTTAGGGGCTGGCTTTATTTAAGAGAGCTTGGCATTATCTTTGAAATTAAGAGCAAATTACAAGTCTA
CTCTCTCATCCCCTGTTCTCTCTGCCTCTCCCCTTTTTTGGTGCTGCCTGGTGCCATCTCATTCAACCATGGGTAGTAAG
ACTGTTAACCTATCTAGCTACTTCCCACTCCTATCTTATTAGATCACTCCCTAACGCCCGAATATATTATATTGTTCTTG
GCCTCATGGGTGGCTGATGACGATCAATGAAAACTTCAGACATGTCTGTGAGTGATGCTTTTTTTCCCCTTGCAAACGAT
AGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28952.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis