Browse Element(s) Details


OsAffx.29011.1.S1_at

Description tigr:9636.m00237
TID=OsAffx.29011.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0328011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03220OsAffx.1646.1.S1_x_at1/118+1487320..1493442retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g03230OsAffx.29008.1.S1_at10/118+1494267..1495958hypothetical protein
LOC_Os08g03240Os.54803.1.S1_at2/118+1497700..1499939Protein kinase domain containing protein
LOC_Os08g03250NANA8+1502459..1502992hypothetical protein
LOC_Os08g03260OsAffx.29010.1.S1_x_at11/118+1504472..1506647von Willebrand factor type A domain containing protein
LOC_Os08g03260OsAffx.29010.1.S1_at11/118+1504472..1506647von Willebrand factor type A domain containing protein
LOC_Os08g03260OsAffx.31678.3.S1_x_at1/118+1504472..1506647von Willebrand factor type A domain containing protein
LOC_Os08g03270OsAffx.29010.2.S1_at11/118+1509100..1511214von Willebrand factor type A domain containing protein
LOC_Os08g03270OsAffx.29010.1.S1_x_at2/118+1509100..1511214von Willebrand factor type A domain containing protein
LOC_Os08g03270OsAffx.31678.3.S1_x_at1/118+1509100..1511214von Willebrand factor type A domain containing protein
LOC_Os08g03280OsAffx.29011.1.S1_at11/118+1514540..1515007hypothetical protein
LOC_Os08g03290Os.12168.2.S1_s_at11/118+1518951..1522883Glyceraldehyde-3-phosphate dehydrogenase, cytosolic, putative, expressed
LOC_Os08g03300Os.57114.1.S1_at11/118+1525654..1527089F-box domain containing protein, expressed
LOC_Os08g03310Os.23145.1.S1_at11/118+1530265..1534032Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os08g03320OsAffx.16805.1.S1_at11/118+1534448..1535987F-box domain containing protein, expressed
LOC_Os08g03330OsAffx.29012.1.S1_at11/118+1537906..1539141hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29011.1.S1_at--85--5171Chr08:1514570..1514594 (25 bp)
GCAAGCTCAGATGGGCTCGCCAGCC
LOC_Os08g03280
OsAffx.29011.1.S1_at--70--4271Chr08:1514624..1514648 (25 bp)
CCGGCAGCCACCGATCGTGACGACG
LOC_Os08g03280
OsAffx.29011.1.S1_at--646--711Chr08:1514658..1514682 (25 bp)
ATGATGATGAGGACACCGTCCTGCT
LOC_Os08g03280
OsAffx.29011.1.S1_at--506--711Chr08:1514661..1514685 (25 bp)
ATGATGAGGACACCGTCCTGCTCGG
LOC_Os08g03280
OsAffx.29011.1.S1_at--1026--6291Chr08:1514663..1514687 (25 bp)
GATGAGGACACCGTCCTGCTCGGCA
LOC_Os08g03280
OsAffx.29011.1.S1_at--419--9491Chr08:1514901..1514925 (25 bp)
TCTGCTGCCGTGTCCACTCGAGAGA
LOC_Os08g03280
OsAffx.29011.1.S1_at--1141--9091Chr08:1514903..1514927 (25 bp)
TGCTGCCGTGTCCACTCGAGAGAAT
LOC_Os08g03280
OsAffx.29011.1.S1_at--1089--9171Chr08:1514906..1514930 (25 bp)
TGCCGTGTCCACTCGAGAGAATCGG
LOC_Os08g03280
OsAffx.29011.1.S1_at--611--4252Chr08:1514908..1514932 (25 bp)
CCGTGTCCACTCGAGAGAATCGGGA
LOC_Os08g03280
OsAffx.29011.1.S1_at--66--7473Chr08:1514910..1514934 (25 bp)
GTGTCCACTCGAGAGAATCGGGAGA
LOC_Os08g03280
OsAffx.29011.1.S1_at--1014--9213Chr08:1514913..1514937 (25 bp)
TCCACTCGAGAGAATCGGGAGAGAA
LOC_Os08g03280
Target Sequence 
GCAAGCTCAGATGGGCTCGCCAGCCGCCTCCCCCTCCCTCCCAAACTGCTCCGCCCGGCAGCCACCGATCGTGACGACGA
TGAGGAAGATGATGATGAGGACACCGTCCTGCTCGGCATCGTCCGCCACATCCCGTGCGCGTTCGACAGCGCCAACCGCC
TCCTATCCTCCTCTCCCGCCGCTGCCGTCGCGCTGTCCGACCTCCTCCTCTCCCACCGCAGCCGTCGCACCGGCCGCCTC
CTCTCCTTTTCCCCGCCGCCATCGTTGCGCCAGCCGGCTCTCTCCCCCTTCTACCACCGCCCCCGCACCACCGTCGGCCA
CCTTTCTCCCCTCTGCTGCCGTGTCCACTCGAGAGAATCGGGAGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29011.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis