Browse Element(s) Details


OsAffx.29067.1.S1_s_at

Description tigr:9636.m00602
TID=OsAffx.29067.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0665911/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06600Os.36139.1.S1_at11/118+3716022..3719897Nuf2 family protein, expressed
LOC_Os08g06610Os.12047.1.S1_a_at11/118+3720558..3721117Mps one binder kinase activator-like 1A, putative
LOC_Os08g06620OsAffx.16857.1.S1_s_at11/118+3721757..3722500expressed protein
LOC_Os08g06630Os.3407.1.S1_a_at10/118+3726171..3730177Sigma-70 region 2 family protein, expressed
LOC_Os08g06640OsAffx.9796.1.S1_x_at11/118+3733845..3739068expressed protein
LOC_Os08g06640Os.17547.1.S1_at9/118+3733845..3739068expressed protein
LOC_Os08g06659Os.31625.1.S1_at11/118+3741880..3743529expressed protein
LOC_Os08g06659OsAffx.29067.1.S1_s_at11/118+3741880..3743529expressed protein
LOC_Os08g06659Os.31625.2.S1_x_at11/118+3741880..3743529expressed protein
LOC_Os08g06680OsAffx.5725.1.S1_at11/118+3744313..3744615hypothetical protein
LOC_Os08g06690OsAffx.21982.1.S1_x_at11/118+3746663..3748451hypothetical protein
LOC_Os08g06690OsAffx.1199.1.S1_at1/118+3746663..3748451hypothetical protein
LOC_Os08g06700Os.31736.1.S1_at11/118+3750972..3754484expressed protein
LOC_Os08g06700OsAffx.21982.1.S1_x_at5/118+3750972..3754484expressed protein
LOC_Os08g06710Os.30615.1.S1_at11/118+3756930..3758452F-box domain containing protein, expressed
LOC_Os08g06720Os.31718.2.S1_at3/118+3761103..3762924hypothetical protein
LOC_Os08g06720Os.31718.2.S1_x_at2/118+3761103..3762924hypothetical protein
LOC_Os08g06720Os.8726.3.S1_at1/118+3761103..3762924hypothetical protein
LOC_Os08g06720OsAffx.1199.1.S1_at1/118+3761103..3762924hypothetical protein
LOC_Os08g06730Os.31718.1.S1_at10/118+3764129..3766331expressed protein
LOC_Os08g06730Os.31718.2.S1_x_at10/118+3764129..3766331expressed protein
LOC_Os08g06730Os.31718.2.S1_at10/118+3764129..3766331expressed protein
LOC_Os08g06740OsAffx.16859.1.S1_at11/118+3767486..3769379hypothetical protein
LOC_Os08g06740OsAffx.21982.1.S1_x_at1/118+3767486..3769379hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29067.1.S1_s_at--899--1291Chr08:3742108..3742132 (25 bp)
AGATGCGCAACGACTCGCATTCTCG
LOC_Os08g06659
OsAffx.29067.1.S1_s_at--874--2592Chr08:3742116..3742140 (25 bp)
AACGACTCGCATTCTCGCAAGATTA
LOC_Os08g06659
OsAffx.29067.1.S1_s_at--787--4931Chr08:3742124..3742148 (25 bp)
GCATTCTCGCAAGATTAACTCCTTT
LOC_Os08g06659
OsAffx.29067.1.S1_s_at--913--2531Chr08:3742140..3742164 (25 bp)
AACTCCTTTGAGCAGATTCGTTTCG
LOC_Os08g06659
OsAffx.29067.1.S1_s_at--500--8911Chr08:3742148..3742172 (25 bp)
TGAGCAGATTCGTTTCGTTTCCAGC
LOC_Os08g06659
OsAffx.29067.1.S1_s_at--216--111Chr08:3742155..3742179 (25 bp)
ATTCGTTTCGTTTCCAGCGAGCAGA
LOC_Os08g06659
OsAffx.29067.1.S1_s_at--865--9391Chr08:3742162..3742186 (25 bp)
TCGTTTCCAGCGAGCAGAACAAGTT
LOC_Os08g06659
OsAffx.29067.1.S1_s_at--520--6751Chr08:3742184..3742208 (25 bp)
GTTCAGATGTTCTCTGAATCTTCAG
LOC_Os08g06659
OsAffx.29067.1.S1_s_at--1045--5231Chr08:3742199..3742223 (25 bp)
GAATCTTCAGAGTTTTAGAGGTCTG
LOC_Os08g06659
OsAffx.29067.1.S1_s_at--1051--7151Chr08:3742219..3742243 (25 bp)
GTCTGATTCAGAGTCTAGGAGTTTC
LOC_Os08g06659
OsAffx.29067.1.S1_s_at--1038--8031Chr08:3742236..3742260 (25 bp)
GGAGTTTCAGAATTGAAGCTTGCTC
LOC_Os08g06659
Target Sequence 
AGATGCGCAACGACTCGCATTCTCGCAAGATTAACTCCTTTGAGCAGATTCGTTTCGTTTCCAGCGAGCAGAACAAGTTC
AGATGTTCTCTGAATCTTCAGAGTTTTAGAGGTCTGATTCAGAGTCTAGGAGTTTCAGAATTGAAGCTTGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29067.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis