Browse Element(s) Details


OsAffx.29068.2.S1_at

Description tigr:9636.m00617
TID=OsAffx.29068.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0681011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06750OsAffx.17666.1.S1_at1/118+3770421..3770833hypothetical protein
LOC_Os08g06760OsAffx.16860.1.S1_at11/118+3772472..3773755hypothetical protein
LOC_Os08g06770OsAffx.16861.1.S1_at11/118+3774769..3777142hypothetical protein
LOC_Os08g06770OsAffx.10584.1.S1_at1/118+3774769..3777142hypothetical protein
LOC_Os08g06780Os.30615.1.S1_at1/118+3779519..3780768F-box domain containing protein
LOC_Os08g06790OsAffx.16862.1.S1_at10/118+3782594..3784548hypothetical protein
LOC_Os08g06790OsAffx.5853.1.S1_at1/118+3782594..3784548hypothetical protein
LOC_Os08g06800Os.50220.1.S1_at11/118+3785754..3789194retrotransposon protein, putative, unclassified, expressed
LOC_Os08g06810OsAffx.29068.2.S1_at11/118+3794440..3796707hypothetical protein
LOC_Os08g06820Os.35344.3.S1_x_at10/118+3799602..3806716transposon protein, putative, Mutator sub-class
LOC_Os08g06820OsAffx.22940.1.S1_s_at10/118+3799602..3806716transposon protein, putative, Mutator sub-class
LOC_Os08g06820OsAffx.22940.5.S1_at9/118+3799602..3806716transposon protein, putative, Mutator sub-class
LOC_Os08g06820OsAffx.22940.2.S1_s_at9/118+3799602..3806716transposon protein, putative, Mutator sub-class
LOC_Os08g06820OsAffx.22940.5.S1_x_at8/118+3799602..3806716transposon protein, putative, Mutator sub-class
LOC_Os08g06820Os.35344.18.S1_x_at8/118+3799602..3806716transposon protein, putative, Mutator sub-class
LOC_Os08g06820OsAffx.22940.3.S1_x_at7/118+3799602..3806716transposon protein, putative, Mutator sub-class
LOC_Os08g06820OsAffx.22940.2.S1_at7/118+3799602..3806716transposon protein, putative, Mutator sub-class
LOC_Os08g06820OsAffx.31552.2.S1_at1/118+3799602..3806716transposon protein, putative, Mutator sub-class
LOC_Os08g06830OsAffx.29068.1.S1_at11/118+3809681..3811100hypothetical protein
LOC_Os08g06840Os.29976.1.S1_at11/118+3812742..3813723expressed protein
LOC_Os08g06850NANA8+3817417..3821222retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29068.2.S1_at--614--3971Chr08:3796191..3796215 (25 bp)
CGGTGACACGGAGATCTGGATGTCC
LOC_Os08g06810
OsAffx.29068.2.S1_at--219--1771Chr08:3796276..3796300 (25 bp)
ACCGGCTGGACGTTGCCATTTACCG
LOC_Os08g06810
OsAffx.29068.2.S1_at--342--4411Chr08:3796290..3796314 (25 bp)
GCCATTTACCGGTCTCGCCGAGTAT
LOC_Os08g06810
OsAffx.29068.2.S1_at--1131--6851Chr08:3796335..3796359 (25 bp)
GTTTGGCTTCTCACGCAGCAATAGA
LOC_Os08g06810
OsAffx.29068.2.S1_at--579--3351Chr08:3796346..3796370 (25 bp)
CACGCAGCAATAGAGACATGAGCAG
LOC_Os08g06810
OsAffx.29068.2.S1_at--502--8911Chr08:3796364..3796388 (25 bp)
TGAGCAGGAACTTTGTCCTCTCCGC
LOC_Os08g06810
OsAffx.29068.2.S1_at--1033--3771Chr08:3796388..3796412 (25 bp)
CTCTGGACCTCGATGGCGGCTCGAA
LOC_Os08g06810
OsAffx.29068.2.S1_at--884--3171Chr08:3796464..3796488 (25 bp)
CAATCTTGAAAGCTCATACCTCGTG
LOC_Os08g06810
OsAffx.29068.2.S1_at--689--311Chr08:3796479..3796503 (25 bp)
ATACCTCGTGAACCTTGGACACGGC
LOC_Os08g06810
OsAffx.29068.2.S1_at--1064--8951Chr08:3796487..3796511 (25 bp)
TGAACCTTGGACACGGCAAGTTCTG
LOC_Os08g06810
OsAffx.29068.2.S1_at--910--3551Chr08:3796528..3796552 (25 bp)
CATACCGATGAGGATCACCGTGACG
LOC_Os08g06810
Target Sequence 
CGGTGACACGGAGATCTGGATGTCCACGCACGGCGGTGGCATCTACTGCTTTGACACGGTGAGCCATGCGTGGAGCACAG
TGGCCACCGGCTGGACGTTGCCATTTACCGGTCTCGCCGAGTATTGCCATGAGCACGGCCTTTGGTTTGGCTTCTCACGC
AGCAATAGAGACATGAGCAGGAACTTTGTCCTCTCCGCTCTGGACCTCGATGGCGGCTCGAAGCTGCCGGTGCTTCACCG
CCTTCCTCTGGAGTTCACACCGCCCGACGCCCTCAATCTTGAAAGCTCATACCTCGTGAACCTTGGACACGGCAAGTTCT
GCATCGCCAGGTTCTTCCATACCGATGAGGATCACCGTGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29068.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis