Browse Element(s) Details


OsAffx.29342.1.S1_at

Description tigr:9636.m02475
TID=OsAffx.29342.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BTBPOZ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2524011/11BTB/POZ domain containing protein
LOC_Os12g117501/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g25190Os.45173.1.S1_x_at3/118+15169874..15178265retrotransposon protein, putative, unclassified
LOC_Os08g25200OsAffx.17143.1.S1_at11/118+15179461..15181210Paired amphipathic helix repeat family protein, expressed
LOC_Os08g25210OsAffx.29340.1.S1_at10/118+15183170..15187107hypothetical protein
LOC_Os08g25220NANA8+15188769..15195800retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g25230OsAffx.5918.1.S1_at11/118+15197273..15198600hypothetical protein
LOC_Os08g25240OsAffx.29342.1.S1_at11/118+15201275..15202534BTB/POZ domain containing protein
LOC_Os08g25250OsAffx.24317.3.S1_at5/118+15202877..15207632hypothetical protein
LOC_Os08g25250OsAffx.24317.5.S1_x_at4/118+15202877..15207632hypothetical protein
LOC_Os08g25260OsAffx.24317.6.S1_x_at3/118+15211633..15213886transposon protein, putative, unclassified
LOC_Os08g25270OsAffx.29343.1.S1_at11/118+15219391..15220254hypothetical protein
LOC_Os08g25280Os.52606.1.S1_at11/118+15221376..15224041pentatricopeptide, putative, expressed
LOC_Os08g25290OsAffx.29344.1.S1_at10/118+15226503..15228668hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29342.1.S1_at--631--391Chr08:15201787..15201811 (25 bp)
ATCACCATCGATGACATGGAGCCCG
LOC_Os08g25240
OsAffx.29342.1.S1_at--1051--1592Chr12:6373026..6373149 (25 bp)
AGCTGCCCGGGAACAGCGAGAGGGA
LOC_Os12g11750
OsAffx.29342.1.S1_at--329--5831Chr08:15201646..15201670 (25 bp)
GACCTGTACAGGATGGACGCGCTGA
LOC_Os08g25240
OsAffx.29342.1.S1_at--240--8751Chr08:15201642..15201666 (25 bp)
TGTACAGGATGGACGCGCTGAGCCA
LOC_Os08g25240
OsAffx.29342.1.S1_at--758--1691Chr08:15201622..15201646 (25 bp)
AGCCAGGCGTGCCAGGACAGGCTGG
LOC_Os08g25240
OsAffx.29342.1.S1_at--281--4151Chr08:15201389..15201413 (25 bp)
CGCGTCGGCGCATGTCAAGAGGGAG
LOC_Os08g25240
OsAffx.29342.1.S1_at--1015--1031Chr08:15201363..15201387 (25 bp)
AGGTGTCCACGGTGAGCTCCATGGA
LOC_Os08g25240
OsAffx.29342.1.S1_at--1127--7451Chr08:15201361..15201385 (25 bp)
GTGTCCACGGTGAGCTCCATGGAGA
LOC_Os08g25240
OsAffx.29342.1.S1_at--183--7251Chr08:15201326..15201350 (25 bp)
GTCCCTTGGTGTGGCCGTGTTCGCT
LOC_Os08g25240
OsAffx.29342.1.S1_at--187--8811Chr08:15201309..15201333 (25 bp)
TGTTCGCTGGGATTGCTTTGGCTGC
LOC_Os08g25240
OsAffx.29342.1.S1_at--847--4131Chr08:15201305..15201329 (25 bp)
CGCTGGGATTGCTTTGGCTGCACTT
LOC_Os08g25240
Target Sequence 
ATCACCATCGATGACATGGAGCCCGACGCGTTCGCCGCCATGCTGCGCTTCGCCTACGACGATACCCTGCCGGAGCTGCC
CGGGAACAGCGAGAGGGACGCCACCGGCGTGCACATGGCGCAGCACCTGCTCGCCGCGGCGGACCTGTACAGGATGGACG
CGCTGAGCCAGGCGTGCCAGGACAGGCTGGCCCGGTGCGTCACGCCGGCCACGGCGGCCGACACGTACGCGCTGGCCGAC
AGGCTCGGCCTCCGGCTGCTCAAGGCGGCCGTCGTCCGGGACGTCGCCGCCACCGGCGCGCGCGGCATCGAGGCCGTCAA
GAACAGCGAGGGGTTCCGGCGGCTCGCGGCGGCCGACGCGGCGACCGCAGAGGAGATGGTGAGGAAGGTGATGGCCGCCG
CGTCGGCGCATGTCAAGAGGGAGGAGGTGTCCACGGTGAGCTCCATGGAGATGATCTTGGGGTCCCTTGGTGTGGCCGTG
TTCGCTGGGATTGCTTTGGCTGCACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29342.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis