Browse Element(s) Details


OsAffx.29486.5.S1_s_at

Description tigr:9637.m03356
TID=OsAffx.29486.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3923011/11prephenate dehydratase family protein, expressed
LOC_Os09g3926011/11prephenate dehydratase, putative, expressed
LOC_Os01g3445011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39200Os.47350.1.S1_at10/119+22513028..22516720expressed protein
LOC_Os09g39210Os.19603.1.S1_at11/119+22526772..22535007expressed protein
LOC_Os09g39210OsAffx.6530.1.S1_x_at11/119+22526772..22535007expressed protein
LOC_Os09g39220Os.26848.1.S1_at4/119+22536159..22540085Ergosterol biosynthesis ERG4/ERG24 family protein, expressed
LOC_Os09g39230OsAffx.29486.5.S1_s_at11/119+22541714..22543384prephenate dehydratase family protein, expressed
LOC_Os09g39230Os.52330.1.S1_at11/119+22541714..22543384prephenate dehydratase family protein, expressed
LOC_Os09g39230OsAffx.29486.2.S1_x_at6/119+22541714..22543384prephenate dehydratase family protein, expressed
LOC_Os09g39230Os.36927.2.S1_x_at6/119+22541714..22543384prephenate dehydratase family protein, expressed
LOC_Os09g39240Os.36927.1.S1_at4/119+22543757..22544563expressed protein
LOC_Os09g39250Os.53896.1.S1_at10/119+22547558..22552244expressed protein
LOC_Os09g39260OsAffx.29486.5.S1_s_at11/119+22560739..22564786prephenate dehydratase, putative, expressed
LOC_Os09g39260OsAffx.29486.2.S1_x_at6/119+22560739..22564786prephenate dehydratase, putative, expressed
LOC_Os09g39260Os.36927.2.S1_x_at6/119+22560739..22564786prephenate dehydratase, putative, expressed
LOC_Os09g39260OsAffx.24960.1.S1_at1/119+22560739..22564786prephenate dehydratase, putative, expressed
LOC_Os09g39270Os.10958.1.S1_at11/119+22565971..22572203expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009094biological_processL-phenylalanine biosynthesis
GO:0004664molecular_functionprephenate dehydratase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29486.5.S1_s_at--421--10633Chr09:22564502..22564526 (25 bp)
TTCGCGTTCCGGGACATCAGCCTCA
LOC_Os09g39260
OsAffx.29486.5.S1_s_at--990--3513Chr09:22564612..22564636 (25 bp)
CATGTTCTACATCGACTTCCAGGCG
LOC_Os09g39260
OsAffx.29486.5.S1_s_at--946--733Chr09:22564613..22564637 (25 bp)
ATGTTCTACATCGACTTCCAGGCGT
LOC_Os09g39260
OsAffx.29486.5.S1_s_at--206--8793Chr09:22564614..22564638 (25 bp)
TGTTCTACATCGACTTCCAGGCGTC
LOC_Os09g39260
OsAffx.29486.5.S1_s_at--1015--10573Chr09:22564616..22564640 (25 bp)
TTCTACATCGACTTCCAGGCGTCCA
LOC_Os09g39260
OsAffx.29486.5.S1_s_at--738--2093Chr09:22564620..22564644 (25 bp)
ACATCGACTTCCAGGCGTCCATGGC
LOC_Os09g39260
OsAffx.29486.5.S1_s_at--1040--513Chr09:22564622..22564646 (25 bp)
ATCGACTTCCAGGCGTCCATGGCGG
LOC_Os09g39260
OsAffx.29486.5.S1_s_at--395--4153Chr09:22564663..22564687 (25 bp)
CGCGCTGTCGGAGATACAGGAGTTC
LOC_Os09g39260
OsAffx.29486.5.S1_s_at--362--8713Chr09:22564668..22564692 (25 bp)
TGTCGGAGATACAGGAGTTCACCTC
LOC_Os09g39260
OsAffx.29486.5.S1_s_at--360--8053Chr09:22564672..22564696 (25 bp)
GGAGATACAGGAGTTCACCTCCTTC
LOC_Os09g39260
OsAffx.29486.5.S1_s_at--530--1273Chr09:22564674..22564698 (25 bp)
AGATACAGGAGTTCACCTCCTTCCT
LOC_Os09g39260
Target Sequence 
TTCGCGTTCCGGGACATCAGCCTCACCAAGATCGAGAGCCGCCCACACCGCCACCGCCCCATCCGGCTCGTCGACGACGC
CAACGTGGGCACGGCCAAGCACTTCGAGTACATGTTCTACATCGACTTCCAGGCGTCCATGGCGGAGGTCAGGGCGCAGA
ACGCGCTGTCGGAGATACAGGAGTTCACCTCCTTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29486.5.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis