Browse Element(s) Details


OsAffx.29609.2.S1_x_at

Description tigr:9636.m04093
TID=OsAffx.29609.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BTBPOZ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4046011/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40410Os.5392.1.S1_at11/118+25442277..25444214ACT domain-containing protein, putative
LOC_Os08g40420Os.9673.1.S1_at11/118+25452147..25456481ternary complex factor MIP1, putative, expressed
LOC_Os08g40420Os.28438.3.S1_at10/118+25452147..25456481ternary complex factor MIP1, putative, expressed
LOC_Os08g40430Os.15707.1.S1_at11/118+25456144..25457751mitochondrial transcription termination factor, putative, expressed
LOC_Os08g40440OsAffx.17435.1.S1_at11/118+25458574..25460173NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g40440OsAffx.17435.1.S1_s_at11/118+25458574..25460173NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g40450Os.18951.1.S1_at11/118+25460280..25464101UvrB/uvrC motif family protein, expressed
LOC_Os08g40460OsAffx.29609.2.S1_x_at11/118+25466936..25468292BTB/POZ domain containing protein
LOC_Os08g40470OsAffx.20858.3.S1_at11/118+25470175..25474196hypothetical protein
LOC_Os08g40470OsAffx.20858.4.S1_x_at11/118+25470175..25474196hypothetical protein
LOC_Os08g40470OsAffx.20858.3.S1_x_at11/118+25470175..25474196hypothetical protein
LOC_Os08g40470OsAffx.20858.1.S1_x_at7/118+25470175..25474196hypothetical protein
LOC_Os08g40480Os.11575.4.S1_x_at11/118+25475063..25476273transposon protein, putative, Pong sub-class, expressed
LOC_Os08g40480Os.11575.3.S1_x_at9/118+25475063..25476273transposon protein, putative, Pong sub-class, expressed
LOC_Os08g40490OsAffx.21997.2.S1_at11/118+25477503..25483169BTB/POZ domain containing protein
LOC_Os08g40490OsAffx.21997.3.S1_x_at11/118+25477503..25483169BTB/POZ domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29609.2.S1_x_at--1019--8531Chr08:25467437..25467461 (25 bp)
TGGAGCGGCCGCGATACACATGTGC
LOC_Os08g40460
OsAffx.29609.2.S1_x_at--932--2091Chr08:25467420..25467444 (25 bp)
ACATGTGCCGGGTGGACCACTTGAA
LOC_Os08g40460
OsAffx.29609.2.S1_x_at--589--2031Chr08:25467402..25467426 (25 bp)
ACTTGAACGGCTCCGACGTGTTCTT
LOC_Os08g40460
OsAffx.29609.2.S1_x_at--1145--7411Chr08:25467385..25467409 (25 bp)
GTGTTCTTCTTCGTCGGTGGCGAGA
LOC_Os08g40460
OsAffx.29609.2.S1_x_at--48--4631Chr08:25467244..25467268 (25 bp)
GCGATGTTCGAAGCTTTGCTGCACT
LOC_Os08g40460
OsAffx.29609.2.S1_x_at--1026--9091Chr08:25467228..25467252 (25 bp)
TGCTGCACTTCATGTACACCGGCGA
LOC_Os08g40460
OsAffx.29609.2.S1_x_at--9--9351Chr08:25467129..25467153 (25 bp)
TCGCGGCGGCGCACGAGTATAAGCT
LOC_Os08g40460
OsAffx.29609.2.S1_x_at--609--2691Chr08:25467109..25467133 (25 bp)
AAGCTCGACAGGCTGAAGCTCATGT
LOC_Os08g40460
OsAffx.29609.2.S1_x_at--67--9611Chr08:25467090..25467114 (25 bp)
TCATGTGCGCCCGAAAACTCGAGGA
LOC_Os08g40460
OsAffx.29609.2.S1_x_at--264--591Chr08:25467027..25467051 (25 bp)
ATGCCAAGATGTGCGGCTGCTCGGA
LOC_Os08g40460
OsAffx.29609.2.S1_x_at--117--2871Chr08:25466992..25467016 (25 bp)
AAGTGTCTCGACTTACTTCTTCTTG
LOC_Os08g40460
Target Sequence 
TGGAGCGGCCGCGATACACATGTGCCGGGTGGACCACTTGAACGGCTCCGACGTGTTCTTCTTCGTCGGTGGCGAGACGT
TCCATGCGCACCGGGCCCTGCTTGCCGTGTGCTCGCCGGTCTTCAAGGCTCTGCTCCTTAGCTCCACGGCGGAGGCAGCA
GCCTGCAGCATCACCCTGAACGACATCAAGCCAGCGATGTTCGAAGCTTTGCTGCACTTCATGTACACCGGCGACTTCCT
GCCAGCGGGAGCCCACTCGTCGTCGCCTGACAGCAGCGACACCAACACCGACACGCTCCACCGGCTGCTCGCGGCGGCGC
ACGAGTATAAGCTCGACAGGCTGAAGCTCATGTGCGCCCGAAAACTCGAGGAGAGCTTGTCGGTGGAGACGGTGGCGAGG
ACACTGGGCTATGCCAAGATGTGCGGCTGCTCGGAGTTGAAGAGCAAGTGTCTCGACTTACTTCTTCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29609.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis