Browse Element(s) Details


OsAffx.29675.1.S1_x_at

Description tigr:9630.m01524
TID=OsAffx.29675.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1622011/11hypothetical protein
LOC_Os06g137506/11expressed protein
LOC_Os06g138905/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g16160NANA2+9191843..9192277hypothetical protein
LOC_Os02g16170Os.47999.3.S1_x_at1/112+9192966..9196433retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g16180Os.45173.5.S1_x_at4/112+9198806..9199597retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g16190NANA2+9199867..9204279retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g16200NANA2+9207188..9210329retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g16210OsAffx.29742.3.S1_x_at11/112+9210687..9214698transposon protein, putative, unclassified
LOC_Os02g16210OsAffx.29742.1.S1_x_at6/112+9210687..9214698transposon protein, putative, unclassified
LOC_Os02g16210OsAffx.29742.2.S1_x_at5/112+9210687..9214698transposon protein, putative, unclassified
LOC_Os02g16210OsAffx.22896.1.S1_x_at1/112+9210687..9214698transposon protein, putative, unclassified
LOC_Os02g16210Os.47114.1.S1_x_at1/112+9210687..9214698transposon protein, putative, unclassified
LOC_Os02g16220OsAffx.29675.1.S1_x_at11/112+9215265..9222849hypothetical protein
LOC_Os02g16220OsAffx.29675.4.S1_x_at6/112+9215265..9222849hypothetical protein
LOC_Os02g16220OsAffx.29675.2.S1_x_at4/112+9215265..9222849hypothetical protein
LOC_Os02g16220OsAffx.7575.1.S1_x_at2/112+9215265..9222849hypothetical protein
LOC_Os02g16220OsAffx.29675.3.S1_x_at2/112+9215265..9222849hypothetical protein
LOC_Os02g16220Os.45229.1.S1_at1/112+9215265..9222849hypothetical protein
LOC_Os02g16220OsAffx.7575.1.S1_at1/112+9215265..9222849hypothetical protein
LOC_Os02g16230NANA2+9223456..9223827hypothetical protein
LOC_Os02g16240OsAffx.24649.3.S1_at10/112+9233932..9238109transposon protein, putative, unclassified
LOC_Os02g16240OsAffx.24649.1.S1_at5/112+9233932..9238109transposon protein, putative, unclassified
LOC_Os02g16250OsAffx.2640.1.S1_at11/112+9238437..9239234NBS-LRR disease resistance protein, putative
LOC_Os02g16260OsAffx.24277.1.S1_at9/112+9240038..9243851Xa1, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29675.1.S1_x_at--28--2911Chr02:9216593..9216617 (25 bp)
AAGGTCACCCTTAATTGATTATGAG
LOC_Os02g16220
OsAffx.29675.1.S1_x_at--200--1532Chr06:7738904..7738928 (25 bp)
AGCAGTTCATGGTTTCTCGAGTTAT
LOC_Os06g13890
OsAffx.29675.1.S1_x_at--127--10432Chr06:7619972..7619996 (25 bp)
TTATCTTAGCGATCTTGCGAACTCT
LOC_Os06g13750
OsAffx.29675.1.S1_x_at--898--4593Chr06:7739443..7739467 (25 bp)
GCGAACTCTGTCAAACCTATGGGCT
LOC_Os06g13890
OsAffx.29675.1.S1_x_at--269--2373Chr06:7739455..7739479 (25 bp)
AAACCTATGGGCTCACTGGACAATA
LOC_Os06g13890
OsAffx.29675.1.S1_x_at--348--8291Chr02:9215954..9215978 (25 bp)
GGCATTAATTGTTCTGTCTACTGAT
LOC_Os02g16220
OsAffx.29675.1.S1_x_at--156--5373Chr09:543399..543423 (25 bp)
GAAGAGAATTTTTCCTGCCAGAATA
NONE
OsAffx.29675.1.S1_x_at--281--6011Chr02:9215736..9215760 (25 bp)
GAGAGCGAACCATCTTGACCATAAA
LOC_Os02g16220
OsAffx.29675.1.S1_x_at--67--152Chr06:7740034..7740053 (20 bp)
ATTAGCATTTTTTCCCATTCTCCAA
LOC_Os06g13890
OsAffx.29675.1.S1_x_at--205--3333Chr09:542825..542849 (25 bp)
CACTATTTCGTGGTGTGCCTTAATC
NONE
OsAffx.29675.1.S1_x_at--270--6653Chr06:7740187..7740211 (25 bp)
GTTGTTGCATCCATCAAGACCATGT
LOC_Os06g13890
Target Sequence 
AAGGTCACCCTTAATTGATTATGAGAACAAGAAGCAGTTCATGGTTTCTCGAGTTATAAACGAGGTATATGATGACATTT
GCAAGAATGGAGGGAGAACCAAGTCAAGAAGGAATAGCCAAAAGATCATTGATACAGGAGAATATTATATTTATCTTAGC
GATCTTGCGAACTCTGTCAAACCTATGGGCTCACTGGACAATAACACATGTGAATTGGCATTAATTGTTCTGTCTACTGA
TATCAAGGACAATTCGAAGAGAATTTTTCCTGCCAGAATAGGAGGATATTTGTTGGATTCGCAGTTGGACAGGAATGAGC
TCAAGAAACACTTCGATCAAACGAGAGCGAACCATCTTGACCATAAAGAATTAGCATTTTTTCCCATTCTCCAAGAATTG
GGTAATGGGAATGATAAGGCTAGTCACTATTTCGTGGTGTGCCTTAATCTGAAAGCTGAAAGATTCGAGGTTTATGATTC
GCTGAGGGGAGAAGATGACGAAGCACTGATTTCAGCATCTCATCTTGTTGTTGCATCCATCAAGACCATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29675.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis