Browse Element(s) Details


OsAffx.29799.2.S1_x_at

Description tigr:9633.m00097
TID=OsAffx.29799.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0184010/11hypothetical protein
LOC_Os09g111301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01780Os.38894.1.S1_s_at11/115+449442..454325ZIK1 protein, putative, expressed
LOC_Os05g01780Os.49298.1.S1_at11/115+449442..454325ZIK1 protein, putative, expressed
LOC_Os05g01790Os.50154.1.S1_s_at11/115+456051..457172expressed protein
LOC_Os05g01790Os.50154.1.S1_at10/115+456051..457172expressed protein
LOC_Os05g01810Os.7098.1.S1_at11/115+464100..466404Vignain precursor, putative, expressed
LOC_Os05g01820Os.3430.1.S1_at11/115+470301..472374Cytochrome b5, putative, expressed
LOC_Os05g01830OsAffx.26681.1.S1_at11/115+474913..476128hypothetical protein
LOC_Os05g01840OsAffx.29799.2.S1_x_at10/115+477136..478482hypothetical protein
LOC_Os05g01840OsAffx.29799.2.S1_at10/115+477136..478482hypothetical protein
LOC_Os05g01840OsAffx.29799.1.S1_at6/115+477136..478482hypothetical protein
LOC_Os05g01840OsAffx.29799.1.S1_x_at5/115+477136..478482hypothetical protein
LOC_Os05g01850NANA5+479406..482265transposon protein, putative, Mutator sub-class
LOC_Os05g01860OsAffx.4227.1.S1_at11/115+483690..484081hypothetical protein
LOC_Os05g01870NANA5+485034..485393hypothetical protein
LOC_Os05g01880NANA5+486781..487428hypothetical protein
LOC_Os05g01890OsAffx.26683.1.S1_x_at10/115+487822..488308hypothetical protein
LOC_Os05g01900OsAffx.6161.1.S1_x_at11/115+492152..494080hypothetical protein
LOC_Os05g01900OsAffx.6161.1.S1_s_at11/115+492152..494080hypothetical protein
LOC_Os05g01910OsAffx.26684.1.S1_at10/115+494994..500963BPM, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29799.2.S1_x_at--378--10072Chr09:6166593..6166612 (20 bp)
TAGTGATTCCCGGTGAATTGACACC
LOC_Os09g11130
OsAffx.29799.2.S1_x_at--290--7411Chr05:477208..477232 (25 bp)
GTGATTCCCGGTGAATTGACACCTC
LOC_Os05g01840
OsAffx.29799.2.S1_x_at--170--6591Chr05:477210..477234 (25 bp)
GATTCCCGGTGAATTGACACCTCAA
LOC_Os05g01840
OsAffx.29799.2.S1_x_at--447--10651Chr05:477212..477236 (25 bp)
TTCCCGGTGAATTGACACCTCAAGC
LOC_Os05g01840
OsAffx.29799.2.S1_x_at--499--3971Chr05:477216..477238 (23 bp)
CGGTGAATTGACACCTCAAGCAGAC
LOC_Os05g01840
OsAffx.29799.2.S1_x_at--1032--3351Chr05:477227..477363 (25 bp)
CACCTCAAGCAGACAATGTGCCAAT
LOC_Os05g01840
OsAffx.29799.2.S1_x_at--1124--2791NONE
AAGATGCAGGATACAAGGGATGAGC
NONE
OsAffx.29799.2.S1_x_at--990--1611Chr05:478066..478090 (25 bp)
AGCTGGATGTCTTTGTACGCGAGGA
LOC_Os05g01840
OsAffx.29799.2.S1_x_at--120--951Chr05:478087..478111 (25 bp)
AGGAAGCTGTGCGAGGATGACATCT
LOC_Os05g01840
OsAffx.29799.2.S1_x_at--3--2691Chr05:478090..478114 (25 bp)
AAGCTGTGCGAGGATGACATCTGGA
LOC_Os05g01840
OsAffx.29799.2.S1_x_at--330--3891Chr05:478093..478117 (25 bp)
CTGTGCGAGGATGACATCTGGAGAC
LOC_Os05g01840
Target Sequence 
TAGTGATTCCCGGTGAATTGACACCTCAAGCAGACAATGTGCCAATCGATTCTATGATTAGGAAGATGCAGGATACAAGG
GATGAGCTGGCCGCAAAAACAATTTTATCACTTAGTGAGAGAAACATTGTGCTTGAGAAGTCGCTCGATGATGTGAACAA
AAGCTGGATGTCTTTGTACGCGAGGAAGCTGTGCGAGGATGACATCTGGAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29799.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis