Browse Element(s) Details


OsAffx.29816.1.S1_at

Description gb:NM_196508.1
DB_XREF= gi:37534375
TID=OsAffx.29816.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative Ac-like transposase (OSJNBa0032I20.18), mRNA.
PROD=putative Ac-like transposase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2818011/11hAT family dimerisation domain containing protein
LOC_Os11g411101/11hAT family dimerisation domain containing protein
LOC_Os09g124101/11hAT dimerisation domain-containing protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28130OsAffx.30565.1.S1_at11/1110+14277415..14278292MATH domain containing protein
LOC_Os10g28130OsAffx.162.1.S1_x_at1/1110+14277415..14278292MATH domain containing protein
LOC_Os10g28140OsAffx.673.2.S1_at11/1110+14280193..14281706retrotransposon protein, putative, unclassified
LOC_Os10g28140OsAffx.673.1.S1_x_at2/1110+14280193..14281706retrotransposon protein, putative, unclassified
LOC_Os10g28140OsAffx.17708.1.S1_at2/1110+14280193..14281706retrotransposon protein, putative, unclassified
LOC_Os10g28150OsAffx.18425.1.S1_at11/1110+14283948..14286530Zinc knuckle family protein
LOC_Os10g28160OsAffx.18426.1.S1_x_at11/1110+14288165..14288497hypothetical protein
LOC_Os10g28170OsAffx.18426.1.S1_x_at11/1110+14292434..14292751hypothetical protein
LOC_Os10g28180OsAffx.29816.1.S1_at11/1110+14300904..14303831hAT family dimerisation domain containing protein
LOC_Os10g28180OsAffx.29816.2.S1_at1/1110+14300904..14303831hAT family dimerisation domain containing protein
LOC_Os10g28190OsAffx.30566.1.S1_at11/1110+14304896..14305209hypothetical protein
LOC_Os10g28200Os.8361.1.S1_at11/1110+14310647..14313945NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os10g28210Os.50013.1.S1_at11/1110+14328215..14330029uncharacterized plant-specific domain TIGR01615 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29816.1.S1_at--664--5411Chr10:14303166..14303190 (25 bp)
GAAGCGGCATGATTGTTTTCCCAAT
LOC_Os10g28180
OsAffx.29816.1.S1_at--598--3133Chr11:24130071..24130095 (25 bp)
AATTTTATTGACCATTCCTGTGACT
LOC_Os11g41110
OsAffx.29816.1.S1_at--718--3591Chr10:14303220..14303244 (25 bp)
CATTCCTGTGACTATTGCATCGGCA
LOC_Os10g28180
OsAffx.29816.1.S1_at--221--5331Chr10:14303274..14303298 (25 bp)
GAAGTCATACTTGCGATCTACAATG
LOC_Os10g28180
OsAffx.29816.1.S1_at--750--10212Chr10:14303428..14303541 (25 bp)
TATTATGCACAGTTTTTATCCTTCT
LOC_Os10g28180
OsAffx.29816.1.S1_at--451--10571Chr10:14303538..14303562 (25 bp)
TTCTTTATGACTTCGCACATGGCCC
LOC_Os10g28180
OsAffx.29816.1.S1_at--1047--9011Chr10:14303639..14303663 (25 bp)
TGCAGCCTCGAAGTGGAGCGACCAA
LOC_Os10g28180
OsAffx.29816.1.S1_at--467--5511Chr10:14303668..14303692 (25 bp)
GAAAAGGTGAACGTGTCCCCGCCAG
LOC_Os10g28180
OsAffx.29816.1.S1_at--906--4411Chr10:14303688..14303712 (25 bp)
GCCAGCCTTGAGGTGGATGACACTA
LOC_Os10g28180
OsAffx.29816.1.S1_at--491--6311Chr10:14303703..14303727 (25 bp)
GATGACACTAGCCTTCCTAGATGGA
LOC_Os10g28180
OsAffx.29816.1.S1_at--164--8891Chr10:14303770..14303794 (25 bp)
TGAGGCTCACGACAACAGGCTCTAG
LOC_Os10g28180
Target Sequence 
GAAGCGGCATGATTGTTTTCCCAATGCAACTATTGCATATAGAATTTTATTGACCATTCCTGTGACTATTGCATCGGCAG
AATGGAGTTTTTCTAAATTGAAGCTATTGAAGTCATACTTGCGATCTACAATGTCACAAGAAAGACTTAATGGTTTGGCT
ATCATAGCACTTGAGGGTGGTATGCTGGGGAGAATCAATATAAAGCTATCATTGAAGATTTTATTTCAAGAAACACTAAA
AGAATGTCGCTTTTCAAGTGAATATTATGCACAGTTTTTATCCTTCTTTATGACTTCGCACATGGCCCCCAAATTTGACG
GGACGGCCCTAACCGAGGGTGTAGCAAAATCGGGGATGACATTTAGCGGCTTGGACGGCAGGGATGCAGCCTCGAAGTGG
AGCGACCAAGGAGGAAAAGGTGAACGTGTCCCCGCCAGCCTTGAGGTGGATGACACTAGCCTTCCTAGATGGAGAGGCGG
AGACAAGGCGGCAGTGACCTTGGTCTCCTCCTCACTGAGGCTCACGACAACAGGCTCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29816.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis