Browse Element(s) Details


OsAffx.29930.1.S1_at

Description tigr:9637.m01685
TID=OsAffx.29930.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1988010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19830Os.52449.1.S1_at11/119+11868806..11873415YDG/SRA domain containing protein, expressed
LOC_Os09g19830Os.35502.1.A1_at10/119+11868806..11873415YDG/SRA domain containing protein, expressed
LOC_Os09g19840OsAffx.29929.1.S1_at11/119+11878033..11878467hypothetical protein
LOC_Os09g19850Os.35754.1.S1_at11/119+11879514..11884068CRS1/YhbY domain containing protein, expressed
LOC_Os09g19860OsAffx.29313.1.S1_at1/119+11885659..11888103transposon protein, putative, Mutator sub-class
LOC_Os09g19870Os.56216.1.S1_at7/119+11891671..11892888hypothetical protein
LOC_Os09g19880OsAffx.29930.1.S1_at10/119+11895013..11901545hypothetical protein
LOC_Os09g19890Os.7809.1.S1_at11/119+11903358..11907118expressed protein
LOC_Os09g19900Os.18123.1.S1_at11/119+11908066..11911723transducin family protein, putative, expressed
LOC_Os09g19910Os.7560.1.S1_at11/119+11912657..11915279expressed protein
LOC_Os09g19920OsAffx.29931.1.S1_at11/119+11915673..11919094expressed protein
LOC_Os09g19930Os.9782.1.S1_at11/119+11919532..11925038HOTHEAD protein precursor, putative, expressed
LOC_Os09g19930Os.23618.1.S1_at1/119+11919532..11925038HOTHEAD protein precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29930.1.S1_at--830--7731Chr09:11899538..11899562 (25 bp)
GGTGGATACCCCAACATCTGATGTA
LOC_Os09g19880
OsAffx.29930.1.S1_at--812--6571Chr09:11899742..11899766 (25 bp)
GATTCTGCACCAGCTATGTGTACTA
LOC_Os09g19880
OsAffx.29930.1.S1_at--650--771Chr09:11899757..11899781 (25 bp)
ATGTGTACTACTAGCTCAGACCCTC
LOC_Os09g19880
OsAffx.29930.1.S1_at--1157--5031Chr09:11899802..11899826 (25 bp)
GCAGACCAGGTTTGCATCCTATATA
LOC_Os09g19880
OsAffx.29930.1.S1_at--428--6771Chr09:11900065..11900089 (25 bp)
GTTACCCCTTTTTATCTGCAGGCGA
LOC_Os09g19880
OsAffx.29930.1.S1_at--883--4991NONE
GCAGGCGACCTGACGGTTTCGTTGA
NONE
OsAffx.29930.1.S1_at--835--6571Chr09:11900703..11900727 (25 bp)
GATTCCTTGGCCTTCTTAAACTCAA
LOC_Os09g19880
OsAffx.29930.1.S1_at--670--1991Chr09:11900722..11900746 (25 bp)
ACTCAATCTGTTCACTGCTTAAGGA
LOC_Os09g19880
OsAffx.29930.1.S1_at--897--5291Chr09:11900760..11901130 (25 bp)
GAAGGCGCACTCTGCGTTCCTGAAG
LOC_Os09g19880
OsAffx.29930.1.S1_at--735--1011Chr09:11901461..11901485 (25 bp)
AGGTTCACATCTATCTTTGGCGTTT
LOC_Os09g19880
OsAffx.29930.1.S1_at--571--4611Chr09:11901480..11901504 (25 bp)
GCGTTTCGTTTTGTCCAATTGGTCA
LOC_Os09g19880
Target Sequence 
GGTGGATACCCCAACATCTGATGTATCCAATGCAAAAGAGCAGAGTCAAGGTTCAACAAGGAACCATCAAACTGAAAGTT
CTAAAGATTCTGCACCAGCTATGTGTACTACTAGCTCAGACCCTCCATCGGGTAAAGGTGAAACTGCAGACCAGGTTTGC
ATCCTATATAACCTTTCTTGGAAAAAGACTGCCGTTTGTGAATTTAAGCTCAGTTCAGATTACAGAGTGGTGGAAGAAAA
ATGTGGCAGTTACCCCTTTTTATCTGCAGGCGACCTGACGGTTTCGTTGAGGGATTCCTTGGCCTTCTTAAACTCAATCT
GTTCACTGCTTAAGGAGAATGGATGGCGTGAAGGCGCACTCTGCGTTCCTGAAGGACCAGGATGTACGCTGAAAATCTTC
ACTTCACCAACAACTGGAACTGGGAGTAGAATTGAGTGTGATACTAATTTGATCCTCAAGTTTTCTACAGGTTCACATCT
ATCTTTGGCGTTTCGTTTTGTCCAATTGGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29930.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis