Browse Element(s) Details


OsAffx.30059.2.S1_at

Description tigr:9637.m02416
TID=OsAffx.30059.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=C2 domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2754010/11C2 domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27490OsAffx.17934.1.S1_at8/119+16703604..16708432hypothetical protein
LOC_Os09g27500Os.27525.2.S1_x_at11/119+16709809..16712773Cytochrome P450 family protein, expressed
LOC_Os09g27500Os.27525.1.A1_at11/119+16709809..16712773Cytochrome P450 family protein, expressed
LOC_Os09g27510Os.56907.1.S1_at9/119+16717632..16719922Cytochrome P450 family protein, expressed
LOC_Os09g27520OsAffx.30058.1.S1_at10/119+16727509..16728111hypothetical protein
LOC_Os09g27530OsAffx.6416.1.S1_at11/119+16729967..16730667hypothetical protein
LOC_Os09g27540OsAffx.30059.2.S1_x_at10/119+16732702..16737889C2 domain containing protein
LOC_Os09g27540OsAffx.30059.2.S1_at10/119+16732702..16737889C2 domain containing protein
LOC_Os09g27540OsAffx.21066.1.S1_x_at1/119+16732702..16737889C2 domain containing protein
LOC_Os09g27550Os.57391.1.S1_at10/119+16740959..16742659expressed protein
LOC_Os09g27560OsAffx.30060.1.S1_at11/119+16743263..16743979hypothetical protein
LOC_Os09g27570Os.52986.1.S1_at11/119+16747261..16750283F-box protein interaction domain containing protein, expressed
LOC_Os09g27570Os.52986.1.S2_at11/119+16747261..16750283F-box protein interaction domain containing protein, expressed
LOC_Os09g27580Os.6037.1.S1_at11/119+16753534..16758621potassium uptake protein, expressed
LOC_Os09g27580Os.6037.2.S1_x_at11/119+16753534..16758621potassium uptake protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30059.2.S1_at--518--4551Chr09:16734159..16734183 (25 bp)
GCGCCAAATACTCGACGGACGCCTA
LOC_Os09g27540
OsAffx.30059.2.S1_at--900--3331Chr09:16734012..16734036 (25 bp)
CACGGTGGCGGGTGTTCGCCGACGA
LOC_Os09g27540
OsAffx.30059.2.S1_at--369--5791Chr09:16733992..16734016 (25 bp)
GACGACGGAGATGAGCGGCAGGACT
LOC_Os09g27540
OsAffx.30059.2.S1_at--636--4971NONE
GCAGGACTACCGCATCCGGAAGATG
NONE
OsAffx.30059.2.S1_at--741--4971Chr09:16733576..16733988 (25 bp)
GCATCCGGAAGATGCACTACCTCCG
LOC_Os09g27540
OsAffx.30059.2.S1_at--1135--6191Chr09:16733491..16733515 (25 bp)
GAGGCTGGAGCGCTCCGAGACGCCG
LOC_Os09g27540
OsAffx.30059.2.S1_at--785--4551Chr09:16733449..16733473 (25 bp)
GCGCCACATGCTAGACGTCGACGCT
LOC_Os09g27540
OsAffx.30059.2.S1_at--79--10031Chr09:16733438..16733462 (25 bp)
TAGACGTCGACGCTCACACGTGGAG
LOC_Os09g27540
OsAffx.30059.2.S1_at--761--4391Chr09:16733403..16733427 (25 bp)
GCCAAGGGGAATTGGTTCCGCATCT
LOC_Os09g27540
OsAffx.30059.2.S1_at--738--7171Chr09:16732759..16732779 (21 bp)
GTCTGCGCTGGCAGCGGCCAAGAAA
LOC_Os09g27540
OsAffx.30059.2.S1_at--518--4711Chr09:16732753..16732777 (25 bp)
GCTGGCAGCGGCCAAGAAACTCCTC
LOC_Os09g27540
Target Sequence 
GCGCCAAATACTCGACGGACGCCTACTGCGTGGCCAAGTACGGCAAGAAGTGGGTGCGGAAGCGCACCGTCACCGACAGT
CCGACAGCCTCAACCCGCGGTGGAACGAGCAGTGCACGTGGCAGGTGTACGACCCGTGCACGGTGCTCACGGTGGCGGGT
GTTCGCCGACGACGGAGATGAGCGGCAGGACTACCGCATCCGGAAGATGCACTACCTCCGCCCGATCGGCGTCGCGCAGC
AGGAGACGCTCCGGGCCGCCACCGTGCGCCTCGTCGCCGCGAGGCTGGAGCGCTCCGAGACGCCGCTGGGGCGGGAGGTG
GTGCGCCACATGCTAGACGTCGACGCTCACACGTGGAGCGTGCGCCGCGCCAAGGGGAATTGGTTCCGCATCTTGGGGGT
GCTCACCTGGGCCGTCGGGCTTGCCCGGTGGCGCAGCTCGTCCACCACCGTGCTCGTACACGTCCTCTACCAGTCTACCT
CGTCCTCGTCTGCGCTGGCAGCGGCCAAGAAACTCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30059.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis