Browse Element(s) Details


OsAffx.30059.2.S1_x_at

Description tigr:9637.m02416
TID=OsAffx.30059.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=C2 domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2754010/11C2 domain containing protein
LOC_Os01g404803/11C2 domain-containing protein, putative, expressed
LOC_Os04g595201/11C2 domain-containing protein, putative, expressed
LOC_Os04g396801/11C2 domain containing protein, expressed
LOC_Os03g448901/11C2 domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27490OsAffx.17934.1.S1_at8/119+16703604..16708432hypothetical protein
LOC_Os09g27500Os.27525.2.S1_x_at11/119+16709809..16712773Cytochrome P450 family protein, expressed
LOC_Os09g27500Os.27525.1.A1_at11/119+16709809..16712773Cytochrome P450 family protein, expressed
LOC_Os09g27510Os.56907.1.S1_at9/119+16717632..16719922Cytochrome P450 family protein, expressed
LOC_Os09g27520OsAffx.30058.1.S1_at10/119+16727509..16728111hypothetical protein
LOC_Os09g27530OsAffx.6416.1.S1_at11/119+16729967..16730667hypothetical protein
LOC_Os09g27540OsAffx.30059.2.S1_x_at10/119+16732702..16737889C2 domain containing protein
LOC_Os09g27540OsAffx.30059.2.S1_at10/119+16732702..16737889C2 domain containing protein
LOC_Os09g27540OsAffx.21066.1.S1_x_at1/119+16732702..16737889C2 domain containing protein
LOC_Os09g27550Os.57391.1.S1_at10/119+16740959..16742659expressed protein
LOC_Os09g27560OsAffx.30060.1.S1_at11/119+16743263..16743979hypothetical protein
LOC_Os09g27570Os.52986.1.S1_at11/119+16747261..16750283F-box protein interaction domain containing protein, expressed
LOC_Os09g27570Os.52986.1.S2_at11/119+16747261..16750283F-box protein interaction domain containing protein, expressed
LOC_Os09g27580Os.6037.1.S1_at11/119+16753534..16758621potassium uptake protein, expressed
LOC_Os09g27580Os.6037.2.S1_x_at11/119+16753534..16758621potassium uptake protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0004791molecular_functionthioredoxin-disulfide reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30059.2.S1_x_at--1154--2871Chr09:16734166..16734190 (25 bp)
AAGGGCGGCGCCAAATACTCGACGG
LOC_Os09g27540
OsAffx.30059.2.S1_x_at--519--4551Chr09:16734159..16734183 (25 bp)
GCGCCAAATACTCGACGGACGCCTA
LOC_Os09g27540
OsAffx.30059.2.S1_x_at--755--3933Chr04:35181233..35181702 (25 bp)
CGGACGCCTACTGCGTGGCCAAGTA
LOC_Os04g59520
OsAffx.30059.2.S1_x_at--843--9714Chr04:23423331..23423350 (20 bp)
TCAACCCGCGGTGGAACGAGCAGTG
LOC_Os04g39680
OsAffx.30059.2.S1_x_at--872--1912Chr09:16734044..16734068 (25 bp)
ACGTGGCAGGTGTACGACCCGTGCA
LOC_Os09g27540
OsAffx.30059.2.S1_x_at--635--4971NONE
GCAGGACTACCGCATCCGGAAGATG
NONE
OsAffx.30059.2.S1_x_at--742--4971Chr09:16733576..16733988 (25 bp)
GCATCCGGAAGATGCACTACCTCCG
LOC_Os09g27540
OsAffx.30059.2.S1_x_at--973--7491Chr09:16733454..16733478 (25 bp)
GTGGTGCGCCACATGCTAGACGTCG
LOC_Os09g27540
OsAffx.30059.2.S1_x_at--80--10031Chr09:16733438..16733462 (25 bp)
TAGACGTCGACGCTCACACGTGGAG
LOC_Os09g27540
OsAffx.30059.2.S1_x_at--737--7171Chr09:16732759..16732779 (21 bp)
GTCTGCGCTGGCAGCGGCCAAGAAA
LOC_Os09g27540
OsAffx.30059.2.S1_x_at--374--8451Chr09:16732744..16732768 (25 bp)
GGCCAAGAAACTCCTCAGCGGCAGG
LOC_Os09g27540
Target Sequence 
AAGGGCGGCGCCAAATACTCGACGGACGCCTACTGCGTGGCCAAGTACGGCAAGAAGTGGGTGCGGAAGCGCACCGTCAC
CGACAGTCCGACAGCCTCAACCCGCGGTGGAACGAGCAGTGCACGTGGCAGGTGTACGACCCGTGCACGGTGCTCACGGT
GGCGGGTGTTCGCCGACGACGGAGATGAGCGGCAGGACTACCGCATCCGGAAGATGCACTACCTCCGCCCGATCGGCGTC
GCGCAGCAGGAGACGCTCCGGGCCGCCACCGTGCGCCTCGTCGCCGCGAGGCTGGAGCGCTCCGAGACGCCGCTGGGGCG
GGAGGTGGTGCGCCACATGCTAGACGTCGACGCTCACACGTGGAGCGTGCGCCGCGCCAAGGGGAATTGGTTCCGCATCT
TGGGGGTGCTCACCTGGGCCGTCGGGCTTGCCCGGTGGCGCAGCTCGTCCACCACCGTGCTCGTACACGTCCTCTACCAG
TCTACCTCGTCCTCGTCTGCGCTGGCAGCGGCCAAGAAACTCCTCAGCGGCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30059.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis