Browse Element(s) Details


OsAffx.30061.3.S1_at

Description tigr:9630.m03252
TID=OsAffx.30061.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g341909/11hypothetical protein
LOC_Os09g276302/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34160NANA2+20420699..20428258transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g34170NANA2+20431336..20434560transposon protein, putative, unclassified
LOC_Os02g34180NANA2+20435190..20441348transposon protein, putative, unclassified
LOC_Os02g34190Os.9329.1.S1_at11/112+20444676..20448737hypothetical protein
LOC_Os02g34190OsAffx.30061.3.S1_at9/112+20444676..20448737hypothetical protein
LOC_Os02g34190OsAffx.30061.2.S1_at1/112+20444676..20448737hypothetical protein
LOC_Os02g34200Os.26886.1.S1_x_at8/112+20451887..20458037transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g34200Os.26886.3.S1_x_at4/112+20451887..20458037transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g34200OsAffx.16244.1.S1_x_at1/112+20451887..20458037transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g34210OsAffx.16467.1.S1_at9/112+20460825..20462776hypothetical protein
LOC_Os02g34210Os.26886.2.S1_s_at9/112+20460825..20462776hypothetical protein
LOC_Os02g34210Os.26886.6.S1_s_at8/112+20460825..20462776hypothetical protein
LOC_Os02g34220OsAffx.24566.1.S1_x_at11/112+20464494..20464898hypothetical protein
LOC_Os02g34220OsAffx.24566.1.S1_at11/112+20464494..20464898hypothetical protein
LOC_Os02g34240OsAffx.12345.1.S1_at9/112+20469152..20470681transposon protein, putative, unclassified
LOC_Os02g34240OsAffx.9423.1.S1_x_at1/112+20469152..20470681transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30061.3.S1_at--934--1591Chr09:16792425..16792785 (25 bp)
AGCTGCTCTACTGAATAAATCCATC
LOC_Os09g27630
OsAffx.30061.3.S1_at--920--3832Chr02:20446512..20446870 (25 bp)
CTGCTCTACTGAATAAATCCATCTC
LOC_Os02g34190
OsAffx.30061.3.S1_at--918--991Chr02:20446922..20447007 (25 bp)
AGGTGCTAGTTACATCTGTGGCCTC
LOC_Os02g34190
OsAffx.30061.3.S1_at--179--7331Chr02:20446924..20447009 (25 bp)
GTGCTAGTTACATCTGTGGCCTCGG
LOC_Os02g34190
OsAffx.30061.3.S1_at--130--4871Chr02:20446926..20447011 (25 bp)
GCTAGTTACATCTGTGGCCTCGGTG
LOC_Os02g34190
OsAffx.30061.3.S1_at--805--5891Chr02:20447050..20447229 (25 bp)
GAGCTGAGCAGGCTAAGTATGATGG
LOC_Os02g34190
OsAffx.30061.3.S1_at--78--2111NONE
ACATGGAACAGTTTTTATTCGTTGT
NONE
OsAffx.30061.3.S1_at--899--5491Chr02:20448641..20448660 (20 bp)
GAACAGTTTTTATTCGTTGTGGTGA
LOC_Os02g34190
OsAffx.30061.3.S1_at--243--3451Chr02:20448641..20448663 (23 bp)
CAGTTTTTATTCGTTGTGGTGAATG
LOC_Os02g34190
OsAffx.30061.3.S1_at--860--775Chr02:20448667..20448691 (25 bp)
ATGTGAATGAATGTGCTGTATGGAT
LOC_Os02g34190
OsAffx.30061.3.S1_at--705--7355Chr12:16122721..16122744 (24 bp)
GTGAATGAATGTGCTGTATGGATGT
NONE
Target Sequence 
AGCTGCTCTACTGAATAAATCCATCTCTGTGTATACATTTTCTGGTGTGTCCCTGAAAATCTTGCGAGGCGTTCGGGGAG
GTGCTAGTTACATCTGTGGCCTCGGTGCCGGTGAAGTGACCTGCGCGGTGGACAAGTGCAAGGAGGAGCTGAGCAGGCTA
AGTATGATGGGGATGAGGAGGAGCAGAGGTGGCCTAAATCTGATGGACAAGATTTTGGCAGTTTGGGAAGCATTTGGGAT
ATGGCAGGCTCCAGAATCCGTGGTTAATTCATTACCATGTAAGAGCTACAAAAAGCAGACAGCCCAATGCAGTGATAACA
TGGAACAGTTTTTATTCGTTGTGGTGAATGTGAATGTGAATGAATGTGCTGTATGGATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30061.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis