Browse Element(s) Details


OsAffx.30081.1.S1_at

Description tigr:9637.m02630
TID=OsAffx.30081.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2961011/11hypothetical protein
LOC_Os12g171302/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29584Os.49892.1.S1_at11/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29584OsAffx.6442.1.S1_s_at11/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29584OsAffx.6442.1.S1_at8/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29584Os.53217.1.S1_x_at3/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29584Os.9332.2.S1_x_at1/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29584OsAffx.7337.1.S1_at1/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29584Os.43567.1.S1_x_at1/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29584OsAffx.1353.1.S1_x_at1/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29584Os.38172.1.S1_x_at1/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29600Os.53208.1.S1_at11/119+18001519..18007035Calcium binding EGF domain containing protein, expressed
LOC_Os09g29610OsAffx.30081.1.S1_at11/119+18009393..18010082hypothetical protein
LOC_Os09g29620OsAffx.30082.1.S1_at11/119+18010849..18011694hypothetical protein
LOC_Os09g29630Os.5681.1.S1_at11/119+18012220..18019624NOL1/NOP2/sun family protein, expressed
LOC_Os09g29640OsAffx.30083.1.S1_at11/119+18021108..18021347hypothetical protein
LOC_Os09g29650OsAffx.17963.1.S1_at11/119+18022855..18026263hypothetical protein
LOC_Os09g29660Os.39617.1.S1_at11/119+18033120..18038232ABC-2 type transporter family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30081.1.S1_at--828--7611Chr09:18009511..18009535 (25 bp)
GGGAAGCTTCGATGCAACCACGATG
LOC_Os09g29610
OsAffx.30081.1.S1_at--157--6331Chr09:18009521..18009545 (25 bp)
GATGCAACCACGATGCGGCAGAATG
LOC_Os09g29610
OsAffx.30081.1.S1_at--437--8612Chr09:18009588..18009612 (25 bp)
TGGGCGGTCATTAGCACGGGCACCT
LOC_Os09g29610
OsAffx.30081.1.S1_at--597--153Chr09:18009597..18009621 (25 bp)
ATTAGCACGGGCACCTCATTTTCAT
LOC_Os09g29610
OsAffx.30081.1.S1_at--464--3992Chr09:18009604..18009628 (25 bp)
CGGGCACCTCATTTTCATTAGACAA
LOC_Os09g29610
OsAffx.30081.1.S1_at--913--10371Chr09:18009615..18009639 (25 bp)
TTTTCATTAGACAATCCTACCCCTG
LOC_Os09g29610
OsAffx.30081.1.S1_at--969--3571Chr09:18009619..18009643 (25 bp)
CATTAGACAATCCTACCCCTGTTAA
LOC_Os09g29610
OsAffx.30081.1.S1_at--931--7831Chr09:18009664..18009937 (25 bp)
GGTACCTGATGGTAATTTTCAAAGC
LOC_Os09g29610
OsAffx.30081.1.S1_at--599--5571Chr09:18010001..18010025 (25 bp)
GAAATGCAATCTTTTAGAGAAGCGT
LOC_Os09g29610
OsAffx.30081.1.S1_at--779--2674Chr10:236534..236558 (25 bp)
AAGCGTATGATGGAGCTTTTCTCTA
NONE
OsAffx.30081.1.S1_at--55--6251Chr09:18010028..18010052 (25 bp)
GATGGAGCTTTTCTCTATCTTTGGG
LOC_Os09g29610
Target Sequence 
GGGAAGCTTCGATGCAACCACGATGCGGCAGAATGGAAGAGAAGTGGGCGGCACAGACGAACTCCCTATTGGCCGAGTGG
GCGGTCATTAGCACGGGCACCTCATTTTCATTAGACAATCCTACCCCTGTTAAACCAACAGTTAGATTAGATTGGTACCT
GATGGTAATTTTCAAAGCAACTCAGTTGGGAAGGCTTTGGTCTTTGCTTCTTAAGGAAGACGAAGGCATTGAAGTAATCG
CGAAATGCAATCTTTTAGAGAAGCGTATGATGGAGCTTTTCTCTATCTTTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30081.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis