Browse Element(s) Details


OsAffx.30130.1.S1_at

Description tigr:9637.m02916
TID=OsAffx.30130.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to flowering locus T
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3385011/11Phosphatidylethanolamine-binding protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33800Os.9057.1.S1_a_at11/119+19955242..19957444expressed protein
LOC_Os09g33810Os.12712.1.S1_at11/119+19960623..19963923Ankyrin repeat domain protein 2, putative, expressed
LOC_Os09g33820Os.14901.1.A1_a_at11/119+19964721..19969670phospholipase A1, putative, expressed
LOC_Os09g33830OsAffx.30129.1.S1_at11/119+19970022..19974776anthocyanin-related membrane protein 1, putative, expressed
LOC_Os09g33840OsAffx.19826.2.S1_at4/119+19977286..19979138hypothetical protein
LOC_Os09g33840OsAffx.20913.1.A1_at1/119+19977286..19979138hypothetical protein
LOC_Os09g33850OsAffx.30130.1.S1_at11/119+19979959..19985742Phosphatidylethanolamine-binding protein, expressed
LOC_Os09g33860OsAffx.17989.1.S1_s_at11/119+19992273..19995387Protein kinase domain containing protein, expressed
LOC_Os09g33860OsAffx.17989.1.S1_at11/119+19992273..19995387Protein kinase domain containing protein, expressed
LOC_Os09g33860Os.6990.1.S1_at4/119+19992273..19995387Protein kinase domain containing protein, expressed
LOC_Os09g33870Os.5580.1.S1_at9/119+19996685..19999169U1 small nuclear ribonucleoprotein 70 kDa, putative, expressed
LOC_Os09g33876Os.49366.1.S1_at11/119+20000609..20006080ARI, RING finger protein, putative, expressed
LOC_Os09g33882Os.55230.1.S1_at11/119+20006443..20007191expressed protein
LOC_Os09g33882Os.55230.1.S1_x_at11/119+20006443..20007191expressed protein
LOC_Os09g33890OsAffx.30131.1.S1_at11/119+20008662..20010318hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009744biological_processresponse to sucrose stimulus
GO:0009910biological_processnegative regulation of flower development
GO:0009911biological_processpositive regulation of flower development
GO:0005515molecular_functionprotein binding
GO:0008429molecular_functionphosphatidylethanolamine binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30130.1.S1_at--611--1851Chr09:19985621..19985640 (20 bp)
ACGAAGCTCTACACACTTGTTATGG
LOC_Os09g33850
OsAffx.30130.1.S1_at--775--2471Chr09:19984386..19984410 (25 bp)
AACACCTTACCTAGATAACCTGCAG
LOC_Os09g33850
OsAffx.30130.1.S1_at--111--7931Chr09:19984362..19984386 (25 bp)
GGATTGGAATGCAGCCCTCTCGAAA
LOC_Os09g33850
OsAffx.30130.1.S1_at--750--7711Chr09:19984330..19984354 (25 bp)
GGGTGTTTCTTATCCAACCATCAAC
LOC_Os09g33850
OsAffx.30130.1.S1_at--761--5471Chr09:19984298..19984322 (25 bp)
GAACTCTTGTTCTATATGCTATTGG
LOC_Os09g33850
OsAffx.30130.1.S1_at--292--5091Chr09:19984067..19984091 (25 bp)
GCACCTTACCAACTTCTCATGGAGA
LOC_Os09g33850
OsAffx.30130.1.S1_at--139--7771Chr09:19983009..19983033 (25 bp)
GGTGACAGACATCCCAGAGGCAATA
LOC_Os09g33850
OsAffx.30130.1.S1_at--1017--5611Chr09:19980810..19980834 (25 bp)
GACAAACAGTTTATGCTCCAGGATG
LOC_Os09g33850
OsAffx.30130.1.S1_at--766--2751Chr09:19980233..19980256 (24 bp)
AAGAAATAAGCCTTCTCGCATCCTT
LOC_Os09g33850
OsAffx.30130.1.S1_at--1152--10571Chr09:19980190..19980214 (25 bp)
TTCTACTCACTATATACACTTCCGG
LOC_Os09g33850
OsAffx.30130.1.S1_at--487--8731Chr09:19980001..19980200 (25 bp)
TACACTTCCGGTTTCAGGGACCAAG
LOC_Os09g33850
Target Sequence 
ACGAAGCTCTACACACTTGTTATGGTGGATCCTGATGCGCCAAGTCCAAGCAAACCAGAATACAGGGAATATTTGCATTG
TTCAAGAACACCTTACCTAGATAACCTGCAGGATTGGAATGCAGCCCTCTCGAAAAGGAGGGGGGTGTTTCTTATCCAAC
CATCAACAGCTGAAGAACTCTTGTTCTATATGCTATTGGTATTTAAGAAGGCACCTTACCAACTTCTCATGGAGAAGGTT
GGTGACAGACATCCCAGAGGCAATAGATGCACGTTTTGGTGGGCTGGTGTTTGGGGTGTCAAGGTAGAAATCTACGAGGG
TGTTACATATGCAAAAGAAGCACGACAAACAGTTTATGCTCCAGGATGGCGGCAAAATTTCAACGTCAGAGATTTCTCTG
CATTTTACAATCTTGGACCACCTGTTGCTGCATTATACTTCAACTGCCAGAAGGAGAGTGGTGTTGGTGGCAGAAGAAAT
AAGCCTTCTCGCATCCTTTTTAATGCTGAACAATTATTCTACTCACTATATACACTTCCGGTTTCAGGGACCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30130.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis