Browse Element(s) Details


OsAffx.30147.1.S1_at

Description tigr:9637.m03033
TID=OsAffx.30147.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3609011/11Plus-3 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36040Os.6854.1.S1_at11/119+20751248..20754166Rhodanese-like domain containing protein, expressed
LOC_Os09g36040OsAffx.18004.1.S1_x_at11/119+20751248..20754166Rhodanese-like domain containing protein, expressed
LOC_Os09g36050OsAffx.6490.1.S1_at11/119+20756459..20756899hypothetical protein
LOC_Os09g36060Os.54812.1.S1_at11/119+20763721..20768090Endoglucanase 1 precursor, putative, expressed
LOC_Os09g36060OsAffx.9743.1.S1_x_at1/119+20763721..20768090Endoglucanase 1 precursor, putative, expressed
LOC_Os09g36070OsAffx.18005.1.S1_at11/119+20768152..20770338Cytochrome P450 family protein
LOC_Os09g36080Os.11426.2.S1_x_at2/119+20773802..20775749Cytochrome P450 family protein, expressed
LOC_Os09g36090Os.13470.1.S1_at11/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36090OsAffx.30147.1.S1_at11/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36090Os.52012.1.S1_x_at10/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36090Os.46045.2.S1_x_at1/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36100Os.11928.1.S1_at11/119+20787061..20789982expressed protein
LOC_Os09g36100Os.47993.1.S1_x_at11/119+20787061..20789982expressed protein
LOC_Os09g36100OsAffx.30148.1.S1_s_at11/119+20787061..20789982expressed protein
LOC_Os09g36110OsAffx.18006.1.S1_at11/119+20793975..20797285Subtilisin N-terminal Region family protein, expressed
LOC_Os09g36120Os.54437.1.S1_at11/119+20797439..20798055expressed protein
LOC_Os09g36130Os.57099.1.S1_at10/119+20798680..20802439expressed protein
LOC_Os09g36140Os.51862.1.S1_at10/119+20810885..20812689RNA recognition motif 2 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30147.1.S1_at--557--3091Chr09:20785462..20785486 (25 bp)
AATACAAATTCTTATCCTGGTTGGG
LOC_Os09g36090
OsAffx.30147.1.S1_at--359--7711Chr09:20785524..20785548 (25 bp)
GGGTGCTCCCATGCAGGTTAATCCA
LOC_Os09g36090
OsAffx.30147.1.S1_at--760--9031Chr09:20785535..20785559 (25 bp)
TGCAGGTTAATCCAGGTCCCAGTAC
LOC_Os09g36090
OsAffx.30147.1.S1_at--185--4351Chr09:20785553..20785577 (25 bp)
CCAGTACTGGAAATGGGACAGGCCA
LOC_Os09g36090
OsAffx.30147.1.S1_at--227--7631Chr09:20785567..20785591 (25 bp)
GGGACAGGCCAAGATAATAACAATA
LOC_Os09g36090
OsAffx.30147.1.S1_at--595--8511Chr09:20785597..20785621 (25 bp)
TGGAATTCACCAAGCGGGAACCCAA
LOC_Os09g36090
OsAffx.30147.1.S1_at--251--10871Chr09:20785623..20785647 (25 bp)
TTGGAATAACCAGCAGCGAGACAAT
LOC_Os09g36090
OsAffx.30147.1.S1_at--200--2231Chr09:20785643..20785667 (25 bp)
ACAATGGAGGCAGGCATTCTGGGCA
LOC_Os09g36090
OsAffx.30147.1.S1_at--227--7751Chr09:20785672..20785696 (25 bp)
GGTGATTTTAATGGCGGTGACTCTG
LOC_Os09g36090
OsAffx.30147.1.S1_at--558--2591Chr09:20785885..20785909 (25 bp)
AACGAGAGACGGTACGACAGGCAAA
LOC_Os09g36090
OsAffx.30147.1.S1_at--622--6311Chr09:20785963..20785987 (25 bp)
GATGACAGGCACAACGGCAGGGATA
LOC_Os09g36090
Target Sequence 
AATACAAATTCTTATCCTGGTTGGGGGGGCCAAGTTGGAAACATGAACCAAAATGTTGGATGGGGTGCTCCCATGCAGGT
TAATCCAGGTCCCAGTACTGGAAATGGGACAGGCCAAGATAATAACAATATGAACTGGAATTCACCAAGCGGGAACCCAA
ATTGGAATAACCAGCAGCGAGACAATGGAGGCAGGCATTCTGGGCATGGTGGTGATTTTAATGGCGGTGACTCTGGTGGG
AGGTCTTGGAGGTCGCAGTCAGGTGGTGATGGAGGGTCGTGGAGGCCTAAAAGGGGAGTCTGCTATTCTATACTCGACAA
GGGATACTGCAAGAATGGTGAGCACTGCAACTTTTCCCATTCAATACCGAATGATGGATATCCATCAAGAAACAGTCGGC
ACTTCGATAGGCAAAATTCAGGTAACGAGAGACGGTACGACAGGCAAAACGAGAGGACTGATCGGCAGTTTGATCGGCAA
TCGTCAGGCAACGAGAGGCGTGATGACAGGCACAACGGCAGGGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30147.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis