Browse Element(s) Details


OsAffx.30174.1.S1_at

Description tigr:9637.m03197
TID=OsAffx.30174.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3765011/11Flavin-binding monooxygenase-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37590OsAffx.18031.1.S1_at11/119+21666226..21673416Plant protein family protein, expressed
LOC_Os09g37600Os.5985.1.S1_at11/119+21676997..21679762LysM domain containing protein, expressed
LOC_Os09g37610Os.13921.2.S1_a_at11/119+21680930..21687019MATE efflux protein, putative, expressed
LOC_Os09g37620Os.24834.1.S1_at11/119+21685571..21688242Flavin-binding monooxygenase-like family protein, expressed
LOC_Os09g37630Os.35344.18.S1_x_at10/119+21689172..21693239Transposable element protein, putative, MuDR
LOC_Os09g37630Os.35344.3.S1_x_at9/119+21689172..21693239Transposable element protein, putative, MuDR
LOC_Os09g37630OsAffx.22940.5.S1_at7/119+21689172..21693239Transposable element protein, putative, MuDR
LOC_Os09g37630OsAffx.22940.5.S1_x_at5/119+21689172..21693239Transposable element protein, putative, MuDR
LOC_Os09g37640OsAffx.18032.1.S1_at11/119+21696607..21697647purine permease family protein, putative
LOC_Os09g37650OsAffx.30174.1.S1_at11/119+21697414..21701076Flavin-binding monooxygenase-like family protein, expressed
LOC_Os09g37660NANA9+21702751..21703977retrotransposon protein, putative, unclassified
LOC_Os09g37670OsAffx.18033.1.S1_at10/119+21707386..21708868hypothetical protein
LOC_Os09g37680OsAffx.18034.1.S1_at11/119+21714187..21715179hypothetical protein
LOC_Os09g37690OsAffx.30175.1.S1_at11/119+21723858..21725671Flavin-binding monooxygenase-like family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0004497molecular_functionmonooxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30174.1.S1_at--1002--5271Chr09:21698751..21698775 (25 bp)
GAAGGCGACTCGTCTTCAGAGACCA
LOC_Os09g37650
OsAffx.30174.1.S1_at--728--7751Chr09:21698713..21698737 (25 bp)
GGTGATCTTCGCTACAGGGTTCAAT
LOC_Os09g37650
OsAffx.30174.1.S1_at--550--8051Chr09:21698671..21698695 (25 bp)
GGAGATGTTCAAATCGCCATTGTTC
LOC_Os09g37650
OsAffx.30174.1.S1_at--222--4951Chr09:21698482..21698642 (25 bp)
GCATAGTTCCACACTTCAGGCAATG
LOC_Os09g37650
OsAffx.30174.1.S1_at--528--571Chr09:21698452..21698476 (25 bp)
ATCCTAGGATCCCACAGCTGGCGAT
LOC_Os09g37650
OsAffx.30174.1.S1_at--514--4631Chr09:21698432..21698456 (25 bp)
GCGATCATCGGCTACGCTGAAAGCT
LOC_Os09g37650
OsAffx.30174.1.S1_at--357--8971Chr09:21698415..21698439 (25 bp)
TGAAAGCTGGTCGAACCTCTGCGTG
LOC_Os09g37650
OsAffx.30174.1.S1_at--263--7451Chr09:21698393..21698417 (25 bp)
GTGTCCGAGCTACTGTCCAAGTGGC
LOC_Os09g37650
OsAffx.30174.1.S1_at--229--10671Chr09:21698360..21698384 (25 bp)
TTCCTCCATGGAAGCTTCAGATTGC
LOC_Os09g37650
OsAffx.30174.1.S1_at--369--4731Chr09:21698232..21698256 (25 bp)
GCTGTGCAGTGATCGGCTGTGCCAA
LOC_Os09g37650
OsAffx.30174.1.S1_at--691--6571Chr09:21698165..21698189 (25 bp)
GATTGGTTGGTACCCTACGGACCAG
LOC_Os09g37650
Target Sequence 
GAAGGCGACTCGTCTTCAGAGACCATAAAGAGCGACGTGGTGATCTTCGCTACAGGGTTCAATGGCGACCAGAAGATCAG
GGAGATGTTCAAATCGCCATTGTTCAGAGAAATCGTGGCCGGCCCACCTTCCAGCATAGTTCCACACTTCAGGCAATGCA
TCCATCCTAGGATCCCACAGCTGGCGATCATCGGCTACGCTGAAAGCTGGTCGAACCTCTGCGTGTCCGAGCTACTGTCC
AAGTGGCTGGCACATTTCCTCCATGGAAGCTTCAGATTGCCAAGCGTAAAGGAGATGGAGGAGGACATAGATGAATGGGA
CAAGTACATGAAACGGTATTCCCCCGGCCGTTTCCGTCGATCTTGCATTGGGCCGGTGAGCGTGCTGTGCAGTGATCGGC
TGTGCCAAGACATGGGGGTTCAACGACGGAGGAAGAAGTGGTTGCTGGCAGATTGGTTGGTACCCTACGGACCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30174.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis