Browse Element(s) Details


OsAffx.30199.1.S1_at

Description tigr:9637.m03340
TID=OsAffx.30199.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=thiol protease sen102 precursor (ec 3.4.22.-). (daylily)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3912011/11Papain family cysteine protease containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39070OsAffx.30196.1.S1_at11/119+22427091..22430027Papain family cysteine protease containing protein, expressed
LOC_Os09g39070OsAffx.28164.2.S1_at1/119+22427091..22430027Papain family cysteine protease containing protein, expressed
LOC_Os09g39080OsAffx.6528.1.S1_at11/119+22432947..22433195hypothetical protein
LOC_Os09g39090OsAffx.6529.1.S1_at11/119+22435990..22438943Papain family cysteine protease containing protein, expressed
LOC_Os09g39090OsAffx.30202.1.S1_x_at1/119+22435990..22438943Papain family cysteine protease containing protein, expressed
LOC_Os09g39100OsAffx.30197.1.S1_at10/119+22445185..22447871Papain family cysteine protease containing protein, expressed
LOC_Os09g39110OsAffx.30198.1.S1_at10/119+22450128..22452723Papain family cysteine protease containing protein, expressed
LOC_Os09g39120OsAffx.30199.1.S1_at11/119+22455000..22457097Papain family cysteine protease containing protein
LOC_Os09g39130Os.21363.1.S1_at11/119+22458747..22461365expressed protein
LOC_Os09g39140OsAffx.18056.1.S1_at11/119+22465311..22466222Papain family cysteine protease containing protein
LOC_Os09g39150Os.47463.1.S1_x_at5/119+22470497..22480343transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g39150Os.14491.2.S1_x_at5/119+22470497..22480343transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009414biological_processresponse to water deprivation
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30199.1.S1_at--822--7891Chr09:22455809..22455833 (25 bp)
GGTTCTGTCAGGTTACGCCGTGGAA
LOC_Os09g39120
OsAffx.30199.1.S1_at--905--2231Chr09:22455768..22455792 (25 bp)
ACAATATTGGCGACCCAGCCTACTA
LOC_Os09g39120
OsAffx.30199.1.S1_at--226--2671Chr09:22455697..22455721 (25 bp)
AAGCCTGTCGTGAAGACGGACGGCA
LOC_Os09g39120
OsAffx.30199.1.S1_at--9--2771Chr09:22455685..22455709 (25 bp)
AAGACGGACGGCACACTCCAGGTGG
LOC_Os09g39120
OsAffx.30199.1.S1_at--1051--9211Chr09:22455669..22455693 (25 bp)
TCCAGGTGGCTTCCAGCGAGACTGC
LOC_Os09g39120
OsAffx.30199.1.S1_at--329--5991Chr09:22455652..22455676 (25 bp)
GAGACTGCCCTCAAACAGAGCGTGT
LOC_Os09g39120
OsAffx.30199.1.S1_at--957--2251Chr09:22455260..22455598 (25 bp)
AAATCGGGTGTGTACAGTGGACCGT
LOC_Os09g39120
OsAffx.30199.1.S1_at--69--8531Chr09:22455243..22455267 (25 bp)
TGGACCGTGCGGGACAAGAATAAAC
LOC_Os09g39120
OsAffx.30199.1.S1_at--53--7091Chr09:22455161..22455185 (25 bp)
GTCAAGAACTCGTGGAACACAACCT
LOC_Os09g39120
OsAffx.30199.1.S1_at--989--3471Chr09:22455069..22455093 (25 bp)
CATGTACGGCATTTACCCCACCAAA
LOC_Os09g39120
OsAffx.30199.1.S1_at--994--2391Chr09:22455047..22455071 (25 bp)
AAAACCAAGACCAGCACTTTCTCTG
LOC_Os09g39120
Target Sequence 
GGTTCTGTCAGGTTACGCCGTGGAACAGGGGATCGCCCTGGACAATATTGGCGACCCAGCCTACTACCCGCCCTACGTGG
CCAAGAAGATGGCCTGCAGGACGGTCGCCGGGAAGCCTGTCGTGAAGACGGACGGCACACTCCAGGTGGCTTCCAGCGAG
ACTGCCCTCAAACAGAGCGTGTACGGGCAGCCCGTCTCCGTGCTCATCGAAGCCGACACCAACTTCCAGCTGTACAAATC
GGGTGTGTACAGTGGACCGTGCGGGACAAGAATAAACCATGCCGTGTTGGCGGTAGGGTATGGTGTGACACTGAACAACA
CTAAGTATTGGATCGTCAAGAACTCGTGGAACACAACCTGGGGCGAGAGTGGTTACATCCGGATGAAGCGTGATGTGGGT
GGCAATAAGGGGCTGTGTGGCATTGCCATGTACGGCATTTACCCCACCAAAACCAAGACCAGCACTTTCTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30199.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis