Browse Element(s) Details


OsAffx.30229.1.S1_at

Description tigr:9638.m00069
TID=OsAffx.30229.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Putative hsr201 hypersensitivity-related protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0165010/11Transferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01610Os.6674.1.S3_a_at11/1110+390934..400195expressed protein
LOC_Os10g01610Os.6674.1.S2_a_at11/1110+390934..400195expressed protein
LOC_Os10g01610Os.6674.1.S1_a_at10/1110+390934..400195expressed protein
LOC_Os10g01620OsAffx.6548.1.S1_at11/1110+402846..403198hypothetical protein
LOC_Os10g01630OsAffx.30228.1.S1_at11/1110+409019..409760hypothetical protein
LOC_Os10g01640Os.46740.1.A1_at11/1110+411601..414793Histidine decarboxylase, putative, expressed
LOC_Os10g01650OsAffx.30229.1.S1_at10/1110+416153..417669Transferase family protein
LOC_Os10g01660OsAffx.30230.1.S1_at11/1110+419568..422146Transferase family protein, expressed
LOC_Os10g01660OsAffx.18530.1.S1_at1/1110+419568..422146Transferase family protein, expressed
LOC_Os10g01670OsAffx.18072.1.S1_at10/1110+428685..429710hypothetical protein
LOC_Os10g01680OsAffx.30232.2.S1_at11/1110+432817..437107Transferase family protein
LOC_Os10g01680OsAffx.30232.3.S1_x_at2/1110+432817..437107Transferase family protein
LOC_Os10g01690OsAffx.30232.3.S1_x_at11/1110+440134..441438Transferase family protein

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30229.1.S1_at--1097--2651NONE
AAGCCCCTGGTTTTCATGCAGGTGA
NONE
OsAffx.30229.1.S1_at--903--8331Chr10:417040..417064 (25 bp)
GGCGGATTTGTTATCGGCACTTACT
LOC_Os10g01650
OsAffx.30229.1.S1_at--482--8451Chr10:416990..417014 (25 bp)
TGGCCACACCCAATTTCTGAAAGCT
LOC_Os10g01650
OsAffx.30229.1.S1_at--165--5991Chr10:416910..416934 (25 bp)
GAGAGCTTATGGCAGCGCGTAACCC
LOC_Os10g01650
OsAffx.30229.1.S1_at--598--2991Chr10:416881..416905 (25 bp)
AATGTTTCACTCCTGCAGCACTTGA
LOC_Os10g01650
OsAffx.30229.1.S1_at--1106--1251Chr10:416837..416861 (25 bp)
AGATCACCCAGTAGAGCCCAATTCG
LOC_Os10g01650
OsAffx.30229.1.S1_at--212--7211Chr10:416798..416822 (25 bp)
GTCGTCGTCGACAGATCATATGGTT
LOC_Os10g01650
OsAffx.30229.1.S1_at--777--4951Chr10:416698..416722 (25 bp)
GCATTTGAGGTCATCACAGCTGCAA
LOC_Os10g01650
OsAffx.30229.1.S1_at--592--2871Chr10:416668..416692 (25 bp)
AAGTGTCACACAGTAGCTCTCGGGT
LOC_Os10g01650
OsAffx.30229.1.S1_at--1046--9491Chr10:416651..416675 (25 bp)
TCTCGGGTATGTGCCGGACCAGAAT
LOC_Os10g01650
OsAffx.30229.1.S1_at--703--7391Chr10:416577..416601 (25 bp)
GTGATCCACCTTTACCGCAAGGATT
LOC_Os10g01650
Target Sequence 
AAGCCCCTGGTTTTCATGCAGGTGACTAGGCTCAAATGTGGCGGATTTGTTATCGGCACTTACTCATGCCACAACATTGT
GGATGCCTTTGGCCACACCCAATTTCTGAAAGCTATAGTCGACATAGCACGTGGTGATGATCACCCAACTGTTCTTCCTG
TGTGGGGAAGAGAGCTTATGGCAGCGCGTAACCCACCCAATGTTTCACTCCTGCAGCACTTGACACCAAGCAAGCTATCC
CCAGATCACCCAGTAGAGCCCAATTCGGCAGCACAACATGTGTCGTCGTCGACAGATCATATGGTTGGCGACTACTTCTT
CTTCGGCCCAAGAGAGATTGCAGCTCTGCAACACCATGCCCAACTGCAGTACTCAAGCACAGCATTTGAGGTCATCACAG
CTGCAATGTGGAAGTGTCACACAGTAGCTCTCGGGTATGTGCCGGACCAGAATAAGAAGGCATGCTTGTTGATGACCATG
AACGCTCGTGGGAAGTGGAAGCGTGATCCACCTTTACCGCAAGGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30229.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis