Browse Element(s) Details


OsAffx.30263.1.S1_at

Description tigr:9638.m00291
TID=OsAffx.30263.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0384011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03790OsAffx.20771.1.S1_x_at11/1110+1699959..1700611hypothetical protein
LOC_Os10g03790OsAffx.20771.1.S1_at11/1110+1699959..1700611hypothetical protein
LOC_Os10g03800OsAffx.30262.1.S1_x_at11/1110+1701315..1701875hypothetical protein
LOC_Os10g03800OsAffx.30262.1.S1_at11/1110+1701315..1701875hypothetical protein
LOC_Os10g03809NANA10+1706335..1706961NA
LOC_Os10g03820OsAffx.18116.1.S1_at11/1110+1710568..1711389hypothetical protein
LOC_Os10g03830Os.27532.1.S1_a_at11/1110+1713491..1724273expressed protein
LOC_Os10g03840OsAffx.30263.1.S1_at11/1110+1725136..1726654hypothetical protein
LOC_Os10g03850OsAffx.30264.1.S1_at11/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03850Os.27520.4.S1_a_at11/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03850Os.10255.1.S1_s_at7/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03850Os.38269.1.S1_x_at2/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03850Os.8362.2.S1_x_at1/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03850Os.51910.1.S1_x_at1/1110+1727724..1736306F-box domain containing protein, expressed
LOC_Os10g03860Os.46707.1.A1_at2/1110+1736069..1736981expressed protein
LOC_Os10g03860Os.55601.1.S1_at1/1110+1736069..1736981expressed protein
LOC_Os10g03870Os.46806.1.S1_at10/1110+1739610..1742217F-box domain containing protein, expressed
LOC_Os10g03880OsAffx.30265.1.S1_at11/1110+1750494..1751369CAF1 family ribonuclease containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30263.1.S1_at--847--6291Chr10:1725477..1725501 (25 bp)
GATGATGATGTTGGCTGTCCAAGTA
LOC_Os10g03840
OsAffx.30263.1.S1_at--354--4733Chr11:23123755..23123779 (25 bp)
GCTGTCCAAGTAATTTTAGTGCCAA
NONE
OsAffx.30263.1.S1_at--578--7273Chr11:23123755..23123776 (22 bp)
GTCCAAGTAATTTTAGTGCCAAACA
NONE
OsAffx.30263.1.S1_at--391--10271Chr10:1725451..1725475 (25 bp)
TTTTAGTGCCAAACATGGAATCCTA
LOC_Os10g03840
OsAffx.30263.1.S1_at--1121--7271Chr10:1725446..1725470 (25 bp)
GTGCCAAACATGGAATCCTAAATAG
LOC_Os10g03840
OsAffx.30263.1.S1_at--1018--3092Chr06:16996237..16996377 (25 bp)
AATAGGAGATTTACCGACGGCGGCG
NONE
OsAffx.30263.1.S1_at--278--5772Chr06:16996264..16996284 (21 bp)
GACGTTGCGCCCTCGGAGACGACGG
NONE
OsAffx.30263.1.S1_at--975--9131Chr10:1725356..1725380 (25 bp)
TGCGGCTGCGCCCAGCGGAGACGAC
LOC_Os10g03840
OsAffx.30263.1.S1_at--176--8271Chr10:1725286..1725310 (25 bp)
GGCAGAGATGCAGCCCGACGACGGT
LOC_Os10g03840
OsAffx.30263.1.S1_at--939--1852Chr10:1725228..1725252 (25 bp)
ACGACGCAGCCACGCAGGAGAGCAA
LOC_Os10g03840
OsAffx.30263.1.S1_at--1041--7691Chr10:1725167..1725191 (25 bp)
GGGTGTGGGATTTGGTTCGCTCAAT
LOC_Os10g03840
Target Sequence 
GATGATGATGTTGGCTGTCCAAGTAATTTTAGTGCCAAACATGGAATCCTAAATAGGAGATTTACCGACGGCGGCGACGT
TGCGCCCTCGGAGACGACGGCTGACGACGGAGGCGCGGCGCTGCGGCTGCGCCCAGCGGAGACGACGGCGGATGGCGGAG
GCGCGGCGCTGCGGCTGCTGCAGCTGAGGGCGGCAGAGATGCAGCCCGACGACGGTGGACAGCGGCGGCGCCGACGCAGC
GAGCCGGCGACGACGCAGCCACGCAGGAGAGCAAGCAGAGGTTGGGACTGGGTTGGGGGAGGTGGCGCTGGGGTGTGGGA
TTTGGTTCGCTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30263.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis