Browse Element(s) Details


OsAffx.30485.1.S1_at

Description tigr:9638.m01818
TID=OsAffx.30485.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2169011/11hypothetical protein
LOC_Os05g313201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21660Os.46572.1.S1_at11/1110+10756636..10766649expressed protein
LOC_Os10g21660OsAffx.8227.1.S1_s_at10/1110+10756636..10766649expressed protein
LOC_Os10g21660OsAffx.8227.1.S1_at9/1110+10756636..10766649expressed protein
LOC_Os10g21660OsAffx.8227.2.S1_at1/1110+10756636..10766649expressed protein
LOC_Os10g21670Os.6812.1.S1_at11/1110+10778872..10779654dehydration stress-induced protein, putative, expressed
LOC_Os10g21679NANA10+10783566..10783886NA
LOC_Os10g21690OsAffx.30485.1.S1_at11/1110+10788510..10790284hypothetical protein
LOC_Os10g21690OsAffx.20879.1.S1_at1/1110+10788510..10790284hypothetical protein
LOC_Os10g21690Os.27004.1.A1_at1/1110+10788510..10790284hypothetical protein
LOC_Os10g21700OsAffx.20453.1.S1_at7/1110+10793015..10797274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g21700Os.6812.1.S1_at5/1110+10793015..10797274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g21700Os.52530.1.S1_at1/1110+10793015..10797274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g21710OsAffx.30486.1.S1_at10/1110+10798197..10801548hypothetical protein
LOC_Os10g21710OsAffx.11259.1.S1_at1/1110+10798197..10801548hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
GO:0009055molecular_functionelectron carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30485.1.S1_at--836--9472Chr05:18123381..18123401 (21 bp)
TCTGATCTTGGCCTTCCACGTTAAA
LOC_Os05g31320
OsAffx.30485.1.S1_at--193--9151Chr10:10789632..10790064 (25 bp)
TCCACGTTAAACTCCCTCAGAAAAT
LOC_Os10g21690
OsAffx.30485.1.S1_at--761--1991Chr10:10789622..10789646 (25 bp)
ACTCCCTCAGAAAATGAGTCTTCCA
LOC_Os10g21690
OsAffx.30485.1.S1_at--1038--6092Chr10:10789607..10789631 (25 bp)
GAGTCTTCCATTTATCAAAACTGAG
LOC_Os10g21690
OsAffx.30485.1.S1_at--47--2991Chr10:10788923..10788943 (21 bp)
AATGAGGTTCCCCAGAAGTGTCGGC
LOC_Os10g21690
OsAffx.30485.1.S1_at--1154--6691Chr10:10788917..10788941 (25 bp)
GTTCCCCAGAAGTGTCGGCCCGACG
LOC_Os10g21690
OsAffx.30485.1.S1_at--628--8352Chr10:10788725..10788749 (25 bp)
GGCGGCAGAAACTTCGGGATCGTCT
LOC_Os10g21690
OsAffx.30485.1.S1_at--100--1432Chr10:10788719..10788743 (25 bp)
AGAAACTTCGGGATCGTCTTGTCCT
LOC_Os10g21690
OsAffx.30485.1.S1_at--310--2633Chr10:10788617..10788641 (25 bp)
AACCTCCTCATCAAGTGGCAGCATG
LOC_Os10g21690
OsAffx.30485.1.S1_at--922--2871Chr10:10788605..10788629 (25 bp)
AAGTGGCAGCATGTGGCGTCGTCCC
LOC_Os10g21690
OsAffx.30485.1.S1_at--740--7191Chr10:10788554..10788578 (25 bp)
GTCGTGCCCCTGTACCGTGTGCCGG
LOC_Os10g21690
Target Sequence 
TCTGATCTTGGCCTTCCACGTTAAACTCCCTCAGAAAATGAGTCTTCCATTTATCAAAACTGAGAGCAACATTGTTAAAA
ATGAGGTTCCCCAGAAGTGTCGGCCCGACGTTCGGCATCGGCGGGTACCTCAACGGCGGCGGCTTCGACCTGATGCTGCG
GAAGCACACAGCCTCGCCTCCGACCACGTCCTCGACGCCACCATGGTGGACGCCAAGGGGAGGCTCCTCGACAGGGCCAC
CATGGAGGAGGACCTCTTCTGGGCCATCCGAGGCGGAGGCGGCAGAAACTTCGGGATCGTCTTGTCCTGGAAGCTCCGGC
TTGTCCCCATTCCGGCCACCGTCACGGTGTTCACCGTCCACCGCTCAAGAAACCAGTCCGCCACCAACCTCCTCATCAAG
TGGCAGCATGTGGCGTCGTCCCTTCCCAACGACGCCTTCCTTCGCGTCGTCGTGCCCCTGTACCGTGTGCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30485.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis