Browse Element(s) Details


OsAffx.30587.1.S1_at

Description tigr:9638.m02510
TID=OsAffx.30587.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BTBPOZ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2941011/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29330OsAffx.30585.1.S1_at11/1110+14926490..14927779BTB/POZ domain containing protein
LOC_Os10g29340OsAffx.18443.1.S1_at10/1110+14930155..14931159BTB/POZ domain containing protein
LOC_Os10g29350OsAffx.8105.1.S1_at10/1110+14932709..14934435hypothetical protein
LOC_Os10g29360NANA10+14935458..14935796BTB/POZ domain containing protein
LOC_Os10g29370OsAffx.30586.1.S1_at11/1110+14937172..14937642speckle-type POZ protein, putative
LOC_Os10g29380OsAffx.18444.1.S1_at11/1110+14939196..14940874BTB/POZ domain containing protein
LOC_Os10g29390OsAffx.20320.1.S1_at11/1110+14942245..14943338BTB/POZ domain containing protein, expressed
LOC_Os10g29400OsAffx.32023.1.S1_at11/1110+14945067..14948962transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g29410OsAffx.30587.1.S1_at11/1110+14950564..14951769BTB/POZ domain containing protein
LOC_Os10g29420Os.46481.3.S1_at3/1110+14952312..14958507retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g29430OsAffx.30588.1.S1_at11/1110+14960950..14963552hypothetical protein
LOC_Os10g29440OsAffx.18445.1.S1_at11/1110+14964658..14965809BTB/POZ domain containing protein, expressed
LOC_Os10g29450OsAffx.30795.1.S1_at11/1110+14971269..14971820hypothetical protein
LOC_Os10g29450OsAffx.30795.1.S1_x_at10/1110+14971269..14971820hypothetical protein
LOC_Os10g29450OsAffx.30795.3.S1_at4/1110+14971269..14971820hypothetical protein
LOC_Os10g29460OsAffx.30589.1.S1_at11/1110+14973201..14973872MATH domain containing protein
LOC_Os10g29470Os.7496.1.S1_a_at11/1110+14974506..14979907mannitol dehydrogenase, putative, expressed
LOC_Os10g29470OsAffx.20940.1.S1_at1/1110+14974506..14979907mannitol dehydrogenase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30587.1.S1_at--278--451Chr10:14950965..14950989 (25 bp)
ATCTACACGGACGAATTGCCCGAGA
LOC_Os10g29410
OsAffx.30587.1.S1_at--1020--5191Chr10:14950953..14950977 (25 bp)
GAATTGCCCGAGAGAGAGGACCACG
LOC_Os10g29410
OsAffx.30587.1.S1_at--1072--2911Chr10:14950920..14950944 (25 bp)
AAGGAGACGAGCTCTGACGACGACG
LOC_Os10g29410
OsAffx.30587.1.S1_at--543--5791Chr10:14950881..14950905 (25 bp)
GACGACAATGGTGCTCAATCGGACC
LOC_Os10g29410
OsAffx.30587.1.S1_at--240--2411Chr10:14950848..14950872 (25 bp)
AAACAATTTACATGGCTGCAGCAAT
LOC_Os10g29410
OsAffx.30587.1.S1_at--607--3411Chr10:14950830..14950854 (25 bp)
CAGCAATTGATCGTAGCCGCGGACA
LOC_Os10g29410
OsAffx.30587.1.S1_at--682--6031Chr10:14950767..14950791 (25 bp)
GAGATGTACGACCACATAGGCGAGA
LOC_Os10g29410
OsAffx.30587.1.S1_at--157--2931Chr10:14950689..14950713 (25 bp)
AAGGACGCATGCTTGGGTTTCCTCG
LOC_Os10g29410
OsAffx.30587.1.S1_at--170--3971Chr10:14950666..14950690 (25 bp)
CGGGTCTCATGGCAACCTGCAAAAG
LOC_Os10g29410
OsAffx.30587.1.S1_at--480--4751Chr10:14950632..14950656 (25 bp)
GCTGATGGCTTGGATCGTGTGATCA
LOC_Os10g29410
OsAffx.30587.1.S1_at--133--511Chr10:14950619..14950643 (25 bp)
ATCGTGTGATCAAGAACTTCCCCTC
LOC_Os10g29410
Target Sequence 
ATCTACACGGACGAATTGCCCGAGAGAGAGGACCACGGCGGAGAAAAGGAGACGAGCTCTGACGACGACGACGACGACGA
CGACGACGACAATGGTGCTCAATCGGACCAAAAACACAAACAATTTACATGGCTGCAGCAATTGATCGTAGCCGCGGACA
GATACGATCTGCAGAGGCTGAAGCTTCTGTGCGAGGAGGAGATGTACGACCACATAGGCGAGAAGACGGTGGAGACCATG
CTCATCCTCGCCGATCACCACCATTGCCGCGTGCTCAAGGACGCATGCTTGGGTTTCCTCGGGTCTCATGGCAACCTGCA
AAAGATGATGGCGGCTGATGGCTTGGATCGTGTGATCAAGAACTTCCCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30587.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis