Browse Element(s) Details


OsAffx.30588.1.S1_at

Description gb:NM_196619.1
DB_XREF= gi:37534597
TID=OsAffx.30588.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative reverse transcriptase (OSJNBa0073D04.31), mRNA.
PROD=putative reverse transcriptase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2943011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29370OsAffx.30586.1.S1_at11/1110+14937172..14937642speckle-type POZ protein, putative
LOC_Os10g29380OsAffx.18444.1.S1_at11/1110+14939196..14940874BTB/POZ domain containing protein
LOC_Os10g29390OsAffx.20320.1.S1_at11/1110+14942245..14943338BTB/POZ domain containing protein, expressed
LOC_Os10g29400OsAffx.32023.1.S1_at11/1110+14945067..14948962transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g29410OsAffx.30587.1.S1_at11/1110+14950564..14951769BTB/POZ domain containing protein
LOC_Os10g29420Os.46481.3.S1_at3/1110+14952312..14958507retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g29430OsAffx.30588.1.S1_at11/1110+14960950..14963552hypothetical protein
LOC_Os10g29440OsAffx.18445.1.S1_at11/1110+14964658..14965809BTB/POZ domain containing protein, expressed
LOC_Os10g29450OsAffx.30795.1.S1_at11/1110+14971269..14971820hypothetical protein
LOC_Os10g29450OsAffx.30795.1.S1_x_at10/1110+14971269..14971820hypothetical protein
LOC_Os10g29450OsAffx.30795.3.S1_at4/1110+14971269..14971820hypothetical protein
LOC_Os10g29460OsAffx.30589.1.S1_at11/1110+14973201..14973872MATH domain containing protein
LOC_Os10g29470Os.7496.1.S1_a_at11/1110+14974506..14979907mannitol dehydrogenase, putative, expressed
LOC_Os10g29470OsAffx.20940.1.S1_at1/1110+14974506..14979907mannitol dehydrogenase, putative, expressed
LOC_Os10g29490OsAffx.22848.3.S1_x_at11/1110+14983679..14990610retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g29490OsAffx.22848.4.S1_at2/1110+14983679..14990610retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g29490OsAffx.22848.4.S1_x_at1/1110+14983679..14990610retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30588.1.S1_at--1151--7111Chr10:14962291..14962315 (25 bp)
GTCATCAAAACAATCCCGGTGCACG
LOC_Os10g29430
OsAffx.30588.1.S1_at--642--151Chr10:14962250..14962274 (25 bp)
ATTAGCTTGGCATTTTGATCCGAGG
LOC_Os10g29430
OsAffx.30588.1.S1_at--745--3871Chr10:14962223..14962247 (25 bp)
CTGTTTCTCAGTTAGATCTGCGTAT
LOC_Os10g29430
OsAffx.30588.1.S1_at--229--9711Chr10:14962077..14962101 (25 bp)
TCAAACATTTTCTTTGGCGCCTCAG
LOC_Os10g29430
OsAffx.30588.1.S1_at--633--8471Chr10:14962063..14962087 (25 bp)
TGGCGCCTCAGCCATAACAGTTTGG
LOC_Os10g29430
OsAffx.30588.1.S1_at--1035--10231Chr10:14962043..14962067 (25 bp)
TTTGGCCATGCGTTGTAATCTGAAG
LOC_Os10g29430
OsAffx.30588.1.S1_at--1011--5531Chr10:14961465..14961489 (25 bp)
GAAACAGACTCGCTTCTGCTGAAGT
LOC_Os10g29430
OsAffx.30588.1.S1_at--984--1431Chr10:14961428..14961452 (25 bp)
AGAACTCCTTTAATCTCTCTGCCAT
LOC_Os10g29430
OsAffx.30588.1.S1_at--651--6871Chr10:14961049..14961073 (25 bp)
GTATAGAGTTTCAGTCGGCAATAAT
LOC_Os10g29430
OsAffx.30588.1.S1_at--98--8231Chr10:14961033..14961057 (25 bp)
GGCAATAATTTTTTCCACACTGGTA
LOC_Os10g29430
OsAffx.30588.1.S1_at--964--1331Chr10:14960976..14961000 (25 bp)
AGAGGGTGTGAGTCGGCTATTATTT
LOC_Os10g29430
Target Sequence 
GTCATCAAAACAATCCCGGTGCACGTGGAGCTGGAGGATACATTAGCTTGGCATTTTGATCCGAGGGGCTGTTTCTCAGT
TAGATCTGCGTATAAAGTGCAGAAAGAGGCTGAAAGGAGAAGTAGAAGGAGAGGCAGTGCAGGAAGTTCGAATGGGGAGA
ATGAGACGGGGGTTTCTTGGAGGAAGCTTTGGAAGATGGGCATACCGGGGAAGATCAAACATTTTCTTTGGCGCCTCAGC
CATAACAGTTTGGCCATGCGTTGTAATCTGAAGCGCAGAGGATGGAGATGGATACCAGCAGCTATAGGGGCGACAAGTGA
AAGGGGGATAATGAAGGTAGAGTTTGAAACAGACTCGCTTCTGCTGAAGTCTGCACTCCAGGAGAACTCCTTTAATCTCT
CTGCCATGGGGGGTGTGATTCTGGAGATTAAGAATGTCATTTCTAGCAGGTATAGAGTTTCAGTCGGCAATAATTTTTTC
CACACTGGTAAAATTGATGAGTTCGAGAAGAAACGAGTAGAAAGAGGGTGTGAGTCGGCTATTATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30588.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis