Browse Element(s) Details


OsAffx.30599.2.S1_x_at

Description tigr:9638.m02562
TID=OsAffx.30599.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2992011/11BTB/POZ domain containing protein
LOC_Os10g298109/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29850Os.46868.1.S1_x_at8/1110+15185425..15186492BTB/POZ domain containing protein
LOC_Os10g29850Os.46868.3.S1_x_at6/1110+15185425..15186492BTB/POZ domain containing protein
LOC_Os10g29860Os.46868.2.S1_x_at11/1110+15188239..15189285hypothetical protein
LOC_Os10g29870NANA10+15191955..15192440expressed protein
LOC_Os10g29880OsAffx.30596.1.S1_at11/1110+15194900..15196610hypothetical protein
LOC_Os10g29900OsAffx.30598.1.S1_at11/1110+15202274..15202684hypothetical protein
LOC_Os10g29920OsAffx.30599.2.S1_x_at11/1110+15209851..15211058BTB/POZ domain containing protein
LOC_Os10g29920OsAffx.20312.4.S1_x_at1/1110+15209851..15211058BTB/POZ domain containing protein
LOC_Os10g29920OsAffx.20312.1.S1_x_at1/1110+15209851..15211058BTB/POZ domain containing protein
LOC_Os10g29920Os.53704.1.S1_x_at1/1110+15209851..15211058BTB/POZ domain containing protein
LOC_Os10g29930NANA10+15211347..15213308hypothetical protein
LOC_Os10g29940NANA10+15215528..15215812hypothetical protein
LOC_Os10g29950OsAffx.20312.1.S1_at11/1110+15217123..15218292BTB/POZ domain containing protein
LOC_Os10g29950OsAffx.20312.1.S1_x_at11/1110+15217123..15218292BTB/POZ domain containing protein
LOC_Os10g29950OsAffx.20312.4.S1_x_at5/1110+15217123..15218292BTB/POZ domain containing protein
LOC_Os10g29950OsAffx.20312.2.S1_x_at2/1110+15217123..15218292BTB/POZ domain containing protein
LOC_Os10g29960OsAffx.30600.1.S1_at9/1110+15219463..15221542hypothetical protein
LOC_Os10g29970OsAffx.19542.3.S1_x_at5/1110+15223170..15227110retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g29980Os.27691.1.S1_x_at1/1110+15232224..15236318retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30599.2.S1_x_at--1078--2132Chr10:15210401..15210425 (25 bp)
ACAGATTGGTGCTCGCGGTGCGCTC
LOC_Os10g29920
OsAffx.30599.2.S1_x_at--454--9331Chr10:15210378..15210402 (25 bp)
TCGCCTGTCTTTGTGGCAGAGCACT
LOC_Os10g29920
OsAffx.30599.2.S1_x_at--976--1572Chr10:15210280..15210304 (25 bp)
AGCTCTACTTAACTTCATCTACACG
LOC_Os10g29920
OsAffx.30599.2.S1_x_at--348--9152Chr10:15210223..15210247 (25 bp)
TGCGACAATGGCTCAGCATCTACTT
LOC_Os10g29920
OsAffx.30599.2.S1_x_at--771--4972Chr10:15210208..15210232 (25 bp)
GCATCTACTTGTTGCTGCGGACAAA
LOC_Os10g29920
OsAffx.30599.2.S1_x_at--854--9792Chr10:15210139..15210163 (25 bp)
TAACCACATCGATGCTGACTCTGTA
LOC_Os10g29920
OsAffx.30599.2.S1_x_at--117--8952Chr10:15210124..15210148 (25 bp)
TGACTCTGTAGCAACCCTCTTGGTG
LOC_Os10g29920
OsAffx.30599.2.S1_x_at--190--1472Chr10:15210089..15210113 (25 bp)
AGCACAATTGTCGTGGTCTGAACAA
LOC_Os10g29920
OsAffx.30599.2.S1_x_at--1013--9052Chr10:15210060..15210084 (25 bp)
TGCATCGAGTTCTTTAGCTCCCCAA
LOC_Os10g29920
OsAffx.30599.2.S1_x_at--137--5972Chr10:15209931..15209955 (25 bp)
GAGAAGGCAATTTTCTCTCCGGAAA
LOC_Os10g29920
OsAffx.30599.2.S1_x_at--524--1411Chr10:15209881..15209905 (25 bp)
AGACATTAGGATTTGGCCTGAGCCA
LOC_Os10g29920
Target Sequence 
ACAGATTGGTGCTCGCGGTGCGCTCGCCTGTCTTTGTGGCAGAGCACTTTGGGCCAATGAAGGAGGGTGTAAACGTAAAC
GACGTGATAGAGATAAATGACATGGATGCACAAGTGTTCAAAGCTCTACTTAACTTCATCTACACGGATACGTTGCTAGA
GATGGATCAAGAAGAAGATGCGACAATGGCTCAGCATCTACTTGTTGCTGCGGACAAATATGGCCTAGAAAGGCTAAAGG
TTAAATGCGAAGAAAGGTTGAGTAACCACATCGATGCTGACTCTGTAGCAACCCTCTTGGTGCTAACCGACAAGCACAAT
TGTCGTGGTCTGAACAAGGCGTGCATCGAGTTCTTTAGCTCCCCAACAGCACTGGCTAAGATCATAGAAACAGATGAATT
TCAGTATTTAACCCAAAGCTGTCCTAATATTTTGGAGGATATAATTTCTAACATTGTTGCTTGTCAATTGGAGAAGGCAA
TTTTCTCTCCGGAAAATGAGGGAGGCAAAATTAACAAGGTAGACATTAGGATTTGGCCTGAGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30599.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis