Browse Element(s) Details


OsAffx.3064.1.S1_at

Description tigr:9630.m05383
TID=OsAffx.3064.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5430011/11hypothetical protein
LOC_Os12g380001/1160S ribosomal protein L2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54270OsAffx.22004.1.S1_at1/112+33269694..33272939retrotransposon protein, putative, unclassified
LOC_Os02g54280OsAffx.24863.1.S1_x_at6/112+33273645..33289238retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g54280Os.51970.1.S1_at2/112+33273645..33289238retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g54280Os.51049.1.S1_at1/112+33273645..33289238retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g54280OsAffx.8166.1.S1_at1/112+33273645..33289238retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g54280OsAffx.26082.3.A1_at1/112+33273645..33289238retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g54280OsAffx.2147.1.A1_at1/112+33273645..33289238retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g54290NANA2+33289993..33290331BRUSHY protein 1, putative
LOC_Os02g54300OsAffx.3064.1.S1_at11/112+33293866..33294282hypothetical protein
LOC_Os02g54310OsAffx.3065.1.S1_at11/112+33295718..33297263expressed protein
LOC_Os02g54320NANA2+33300722..33301896hypothetical protein
LOC_Os02g54330OsAffx.12637.1.S1_at11/112+33306895..33308136F-box domain containing protein
LOC_Os02g54340Os.56032.1.S1_x_at10/112+33309335..3331333326S protease regulatory subunit 7, putative, expressed
LOC_Os02g54340Os.14993.1.A1_at10/112+33309335..3331333326S protease regulatory subunit 7, putative, expressed
LOC_Os02g54350OsAffx.3066.1.S1_at10/112+33313919..33314589expressed protein
LOC_Os02g54360OsAffx.3067.1.S1_at11/112+33316061..33316627expressed protein
LOC_Os02g54370Os.54364.1.S1_at11/112+33318671..33320055hypro1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0000311cellular_componentplastid large ribosomal subunit
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3064.1.S1_at--457--7771Chr02:33294192..33294216 (25 bp)
GGTGCACTCGATCTTGGAAGAAAGA
LOC_Os02g54300
OsAffx.3064.1.S1_at--828--5491Chr02:33294169..33294193 (25 bp)
GAACAAGGCGCGCTGGATTTTCCTT
LOC_Os02g54300
OsAffx.3064.1.S1_at--1080--6531Chr02:33294154..33294178 (25 bp)
GATTTTCCTTTGTTATCTACCTCAG
LOC_Os02g54300
OsAffx.3064.1.S1_at--337--8791Chr02:33294144..33294168 (25 bp)
TGTTATCTACCTCAGATGCGCAGGG
LOC_Os02g54300
OsAffx.3064.1.S1_at--699--4091Chr02:33294070..33294094 (25 bp)
CGAACGATCCATCCGTCCTATAGAC
LOC_Os02g54300
OsAffx.3064.1.S1_at--503--10191Chr02:33294052..33294076 (25 bp)
TATAGACTCCATCGGCACAGCGGTC
LOC_Os02g54300
OsAffx.3064.1.S1_at--343--1032Chr12:23316699..23316820 (25 bp)
AGGTGACGTTCCGTCCATCGGCAAC
LOC_Os12g38000
OsAffx.3064.1.S1_at--531--7271Chr02:33293999..33294023 (25 bp)
GTCCATCGGCAACTGAAATCCAAGA
LOC_Os02g54300
OsAffx.3064.1.S1_at--277--5531Chr02:33293976..33294000 (25 bp)
GAAAAAGTCGAATCACCAACACCCA
LOC_Os02g54300
OsAffx.3064.1.S1_at--550--1811Chr02:33293956..33293980 (25 bp)
ACCCAACGAGAAGTCATCAACGGAT
LOC_Os02g54300
OsAffx.3064.1.S1_at--498--9711Chr02:33293940..33293964 (25 bp)
TCAACGGATGTTCTTGGGCACTCAC
LOC_Os02g54300
Target Sequence 
GGTGCACTCGATCTTGGAAGAAAGAACAAGGCGCGCTGGATTTTCCTTTGTTATCTACCTCAGATGCGCAGGGGCCCGGA
CGCGCCTGCGGAGCGGTTGCCGTCTAGGCGACTGGGGGTGGCCGAACGATCCATCCGTCCTATAGACTCCATCGGCACAG
CGGTCGTGCTCGGTGCCGTCCAGGTGACGTTCCGTCCATCGGCAACTGAAATCCAAGAAAAAGTCGAATCACCAACACCC
AACGAGAAGTCATCAACGGATGTTCTTGGGCACTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3064.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis