Browse Element(s) Details


OsAffx.30642.1.S1_at

Description tigr:9638.m02831
TID=OsAffx.30642.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative cysteinyl-tRNA synthetase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3257011/11tRNA synthetase class I family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32540Os.10154.1.S1_at9/1110+16710651..16718168SAP domain containing protein, expressed
LOC_Os10g32550Os.10551.1.S1_at11/1110+16718650..16724037Chaperonin CPN60-1, mitochondrial precursor, putative, expressed
LOC_Os10g32560Os.35344.3.S1_x_at8/1110+16726740..16732635transposon protein, putative, Mutator sub-class
LOC_Os10g32560Os.35344.18.S1_x_at8/1110+16726740..16732635transposon protein, putative, Mutator sub-class
LOC_Os10g32560OsAffx.22940.5.S1_x_at3/1110+16726740..16732635transposon protein, putative, Mutator sub-class
LOC_Os10g32570OsAffx.30642.1.S1_at11/1110+16733823..16737210tRNA synthetase class I family protein, putative, expressed
LOC_Os10g32570Os.52782.1.S1_at1/1110+16733823..16737210tRNA synthetase class I family protein, putative, expressed
LOC_Os10g32580Os.5735.1.S1_at11/1110+16741534..16743085GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g32590Os.8163.1.S1_at11/1110+16744759..16745905universal stress protein family protein, expressed
LOC_Os10g32600OsAffx.30643.1.S1_at11/1110+16746707..16748588myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os10g32620NANA10+16758101..16758409hypothetical protein
LOC_Os10g32630OsAffx.25007.1.S1_at11/1110+16762174..16765071retrotransposon protein, putative, unclassified
LOC_Os10g32630OsAffx.25007.2.S1_s_at11/1110+16762174..16765071retrotransposon protein, putative, unclassified
LOC_Os10g32630OsAffx.25007.2.S1_at1/1110+16762174..16765071retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006423biological_processcysteinyl-tRNA aminoacylation
GO:0004817molecular_functioncysteine-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30642.1.S1_at--262--2351Chr10:16736264..16736288 (25 bp)
AAACCACTCTGATACAGCTCTTCAG
LOC_Os10g32570
OsAffx.30642.1.S1_at--687--10731Chr10:16736290..16736314 (25 bp)
TTGCATCTGGCCGTCTATATTATAT
LOC_Os10g32570
OsAffx.30642.1.S1_at--1076--711Chr10:16736547..16736571 (25 bp)
ATGATCTGCATACAACGGCTGCTCT
LOC_Os10g32570
OsAffx.30642.1.S1_at--589--8331Chr10:16736563..16736584 (22 bp)
GGCTGCTCTTGATCACCTGATGAAG
LOC_Os10g32570
OsAffx.30642.1.S1_at--946--251Chr10:16736810..16736834 (25 bp)
ATATCCAAGCTCTGGTTGCCTTGCA
LOC_Os10g32570
OsAffx.30642.1.S1_at--528--6471Chr10:16736848..16736872 (25 bp)
GATAAACTTTCCATCCTTGGCTTAA
LOC_Os10g32570
OsAffx.30642.1.S1_at--323--2991Chr10:16736877..16737003 (25 bp)
AATGTCATCTTTGGCTGAGCAACTG
LOC_Os10g32570
OsAffx.30642.1.S1_at--1019--2911Chr10:16737088..16737112 (25 bp)
AAGGACTTCGCCGAGTCTGACCGGA
LOC_Os10g32570
OsAffx.30642.1.S1_at--643--8931Chr10:16737105..16737129 (25 bp)
TGACCGGATCAGAACAGAGCTCTCT
LOC_Os10g32570
OsAffx.30642.1.S1_at--414--9491Chr10:16737127..16737151 (25 bp)
TCTGCTCTCGGGATTGCTTTGATGG
LOC_Os10g32570
OsAffx.30642.1.S1_at--463--811Chr10:16737148..16737172 (25 bp)
ATGGGTGAGCCTACTGGGACATTAT
LOC_Os10g32570
Target Sequence 
AAACCACTCTGATACAGCTCTTCAGTTTGCATCTGGCCGTCTATATTATATTTATCAGACTCTACATGACGGTGAAGAAA
CTGTGTCGTTATATGGTGAACACAAGTTGGAAAACTCAATACCGGCTGATGATCAAAAGTTGATCGAAGAGAACCGTTCA
AATTTTCTTGAGAAAATGTCAGATGATCTGCATACAACGGCTGCTCTTGATCACCTGATGAAGTTGCAACAAAAGCTAGA
ACACCAGAAAAAGAAACAATCACAGAAGCAGCAGCAGCAGCAACAGAAAAAACCAGAAGATTATATCCAAGCTCTGGTTG
CCTTGCAGAATGAAGTCACCGATAAACTTTCCATCCTTGGCTTAATGCCAATGTCATCTTTGGCTGAGCAACTGAAGGAC
AAGGCATTGAAGCGAGCTGGCATGACTGCAGAGCAATTGCAACAAATGATCGAACAAAGAACGCTTGCCAGGAAGAACAA
GGACTTCGCCGAGTCTGACCGGATCAGAACAGAGCTCTCTGCTCTCGGGATTGCTTTGATGGGTGAGCCTACTGGGACAT
TAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30642.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis