Browse Element(s) Details


OsAffx.30669.1.S1_at

Description tigr:9638.m03021
TID=OsAffx.30669.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3434011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34270Os.46661.1.S1_s_at11/1110+17955861..17956823expressed protein
LOC_Os10g34280OsAffx.30666.1.S1_at10/1110+17958467..17958872hypothetical protein
LOC_Os10g34280OsAffx.30666.1.S1_x_at10/1110+17958467..17958872hypothetical protein
LOC_Os10g34280OsAffx.30667.1.S1_at1/1110+17958467..17958872hypothetical protein
LOC_Os10g34290Os.54089.2.S1_at1/1110+17961030..17964570retrotransposon protein, putative, unclassified
LOC_Os10g34300OsAffx.30667.1.S1_at11/1110+17965074..17967592F-box domain containing protein
LOC_Os10g34310Os.24902.1.S1_at9/1110+17968231..17970513Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g34320Os.54931.1.S2_at11/1110+17971833..17975139expressed protein
LOC_Os10g34320Os.54931.1.S1_at11/1110+17971833..17975139expressed protein
LOC_Os10g34330OsAffx.30668.1.S1_at10/1110+17975392..17977020hypothetical protein
LOC_Os10g34340OsAffx.30669.1.S1_at11/1110+17979450..17981818F-box domain containing protein
LOC_Os10g34350Os.27128.1.A1_a_at11/1110+17982248..17984720aminotransferase, classes I and II family protein, expressed
LOC_Os10g34360Os.168.1.S1_at11/1110+17986723..17989063Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os10g34370Os.46660.1.S1_x_at11/1110+17989365..17990845expressed protein
LOC_Os10g34380Os.23309.1.S1_a_at11/1110+17991518..18002175FF domain containing protein, expressed
LOC_Os10g34390Os.46063.1.S1_at11/1110+18003257..18010180Uncharacterized ACR, COG1678 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30669.1.S1_at--951--971Chr10:17981262..17981283 (22 bp)
AGGAGATCTACTGGCTGGTCGACCC
LOC_Os10g34340
OsAffx.30669.1.S1_at--678--2591Chr10:17981480..17981504 (25 bp)
AACGCCATAGACGTGTGGGCAATGC
LOC_Os10g34340
OsAffx.30669.1.S1_at--739--8591Chr10:17981528..17981552 (25 bp)
TGGTCCATGGTGTACCGCATCGAGC
LOC_Os10g34340
OsAffx.30669.1.S1_at--506--1591Chr10:17981550..17981574 (25 bp)
AGCTCGCCGGGTACTCGCCGGAGTA
LOC_Os10g34340
OsAffx.30669.1.S1_at--278--1872Chr10:17981612..17981636 (25 bp)
ACGAGCGGGCGCATCCTGCTCAACA
LOC_Os10g34340
OsAffx.30669.1.S1_at--563--2471Chr10:17981633..17981657 (25 bp)
AACACGGAGCAGTCGCTGGGTTACT
LOC_Os10g34340
OsAffx.30669.1.S1_at--423--1151Chr10:17981643..17981667 (25 bp)
AGTCGCTGGGTTACTACGATCCCAA
LOC_Os10g34340
OsAffx.30669.1.S1_at--450--5891Chr10:17981675..17981699 (25 bp)
GAGCTGGAGACGATCTACCGTGTCA
LOC_Os10g34340
OsAffx.30669.1.S1_at--777--9951Chr10:17981690..17981714 (25 bp)
TACCGTGTCAGAAGGATGTACCAGG
LOC_Os10g34340
OsAffx.30669.1.S1_at--636--2271Chr10:17981719..17981743 (25 bp)
AAATGATGGCAGTGGTGCATGGTAC
LOC_Os10g34340
OsAffx.30669.1.S1_at--859--6631Chr10:17981762..17981786 (25 bp)
GTTGTCTGTGAAGAGAGCCTGTTTT
LOC_Os10g34340
Target Sequence 
AGGAGATCTACTGGCTGGTCGACCCAGCGCTCGGCCCTGCATCCGCCACCACGACGACGCCGCCGACGTCGGCGTGCGAG
CTGGTGGCGCTCGACTGCCGCAACGCCGTCGCGCGCCACCACTACGACGTCGTGCGGGGGCCGCCGATGCCACCGTGCGG
CCGCGTCTCCGTCCTCCGGCTCCACGGCGCGCTCTGCGTGGCGTGCTCGGACCGCGACGCGAACGCCATAGACGTGTGGG
CAATGCAGCAGGGCGCCGGCACCGCCGTCTGGTCCATGGTGTACCGCATCGAGCTCGCCGGGTACTCGCCGGAGTACACG
TCGGAGAAGACGACGGTGATGGGCGTCGACCCGACGAGCGGGCGCATCCTGCTCAACACGGAGCAGTCGCTGGGTTACTA
CGATCCCAAGACGGGGGAGCTGGAGACGATCTACCGTGTCAGAAGGATGTACCAGGAGGCAAATGATGGCAGTGGTGCAT
GGTACGATGGGAGGTTCTGTGCGGTTGTCTGTGAAGAGAGCCTGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30669.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis