Browse Element(s) Details


OsAffx.30731.1.S1_at

Description tigr:9638.m03635
TID=OsAffx.30731.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative arm repeat containing protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4012011/11U-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40060Os.46130.1.S1_a_at11/1110+21124348..21130057protein kinase family protein, putative, expressed
LOC_Os10g40070OsAffx.7927.1.S1_at11/1110+21130337..21130941expressed protein
LOC_Os10g40080OsAffx.31578.2.S1_at11/1110+21132668..21133649hypothetical protein
LOC_Os10g40090Os.12697.1.S1_at11/1110+21135323..21137158Beta-expansin 1a precursor, putative, expressed
LOC_Os10g40100Os.3287.1.S1_a_at10/1110+21137938..21143082U-box domain containing protein, expressed
LOC_Os10g40100Os.15454.1.S2_x_at1/1110+21137938..21143082U-box domain containing protein, expressed
LOC_Os10g40110Os.3284.1.S1_at11/1110+21143911..21147557chloroplast outer membrane protein, putative, expressed
LOC_Os10g40120OsAffx.30731.1.S1_at11/1110+21149739..21152329U-box domain containing protein, expressed
LOC_Os10g40130Os.3278.1.S1_at11/1110+21153054..21156614UDP-N-acetylmuramyl-tripeptide synthetases family protein, expressed
LOC_Os10g40140Os.46454.1.S1_at11/1110+21157154..21160052vesicle-associated membrane family protein, putative, expressed
LOC_Os10g40140Os.46502.2.S1_x_at5/1110+21157154..21160052vesicle-associated membrane family protein, putative, expressed
LOC_Os10g40150NANA10+21164197..21170307retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g40160NANA10+21170623..21173548retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g40170Os.46502.2.S1_x_at10/1110+21175673..21175963expressed protein
LOC_Os10g40170Os.46502.1.S1_at2/1110+21175673..21175963expressed protein
LOC_Os10g40180OsAffx.10596.1.S1_x_at1/1110+21177216..21183014retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30731.1.S1_at--14--31Chr10:21150245..21150269 (25 bp)
ATTTCGGAGCCACAGGACAACTAAT
LOC_Os10g40120
OsAffx.30731.1.S1_at--160--4411Chr10:21150217..21150241 (25 bp)
GCCACAGCAGGAGTATCTTCAGTTA
LOC_Os10g40120
OsAffx.30731.1.S1_at--728--1211Chr10:21150197..21150221 (25 bp)
AGTTACATCCTGACCATGACAATGG
LOC_Os10g40120
OsAffx.30731.1.S1_at--1128--2571Chr10:21150157..21150181 (25 bp)
AACGTTGCTACACCGAAGGAGCCTG
LOC_Os10g40120
OsAffx.30731.1.S1_at--827--2911Chr10:21150142..21150166 (25 bp)
AAGGAGCCTGACTGCATTTTCTCCA
LOC_Os10g40120
OsAffx.30731.1.S1_at--47--171Chr10:21150127..21150151 (25 bp)
ATTTTCTCCAGCATCAACTGTACCA
LOC_Os10g40120
OsAffx.30731.1.S1_at--27--10791Chr10:21150095..21150119 (25 bp)
TTGATAAAGACTCCATTCCTTCCCA
LOC_Os10g40120
OsAffx.30731.1.S1_at--609--471Chr10:21149930..21150090 (25 bp)
ATCTGCCCGATTTCTCAGGAGATCA
LOC_Os10g40120
OsAffx.30731.1.S1_at--134--691Chr10:21149906..21149930 (25 bp)
ATGAGGGAACCCTGCATTGCAGCAG
LOC_Os10g40120
OsAffx.30731.1.S1_at--215--2871Chr10:21149836..21149860 (25 bp)
AAGGGCACGAAGTGTCTCCCATGAC
LOC_Os10g40120
OsAffx.30731.1.S1_at--941--2391Chr10:21149778..21149802 (25 bp)
AAACTTTGCTCTTCGTTCTGTAATC
LOC_Os10g40120
Target Sequence 
ATTTCGGAGCCACAGGACAACTAATCAAGCCACAGCAGGAGTATCTTCAGTTACATCCTGACCATGACAATGGTGTCAGA
CAACCGGAAACGTTGCTACACCGAAGGAGCCTGACTGCATTTTCTCCAGCATCAACTGTACCATCACAGTTTGATAAAGA
CTCCATTCCTTCCCACTTCATCTGCCCGATTTCTCAGGAGATCATGAGGGAACCCTGCATTGCAGCAGACGGGTTCACCT
ATGAAGCTGAAGCGATCATCAATTGGTTTGATGAAGGGCACGAAGTGTCTCCCATGACCAAGCAGCCTCTTGTGCACCGC
GACCTGATCCCAAACTTTGCTCTTCGTTCTGTAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30731.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis