Browse Element(s) Details


OsAffx.30816.1.S1_s_at

Description tigr:9640.m00350
TID=OsAffx.30816.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AL161564 steroid sulfotransferase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0435011/11Sulfotransferase domain containing protein, expressed
LOC_Os11g0455011/11Sulfotransferase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04290Os.26409.1.S1_a_at11/1112+1816628..1820688TAP42-like family protein, expressed
LOC_Os12g04290Os.26409.2.S1_s_at11/1112+1816628..1820688TAP42-like family protein, expressed
LOC_Os12g04290Os.26409.3.S1_s_at11/1112+1816628..1820688TAP42-like family protein, expressed
LOC_Os12g04300OsAffx.31574.1.S1_at9/1112+1821392..1822197Sulfotransferase domain containing protein
LOC_Os12g04310OsAffx.19542.3.S1_x_at10/1112+1823634..1827469retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g04320OsAffx.31574.2.S1_at11/1112+1829961..1830974Sulfotransferase domain containing protein
LOC_Os12g04330OsAffx.7481.1.S1_at11/1112+1833700..1834413hypothetical protein
LOC_Os12g04340OsAffx.19485.2.S1_at11/1112+1836950..1837789Sulfotransferase domain containing protein
LOC_Os12g04340OsAffx.19485.1.S1_s_at11/1112+1836950..1837789Sulfotransferase domain containing protein
LOC_Os12g04340OsAffx.3105.1.S1_at1/1112+1836950..1837789Sulfotransferase domain containing protein
LOC_Os12g04350OsAffx.30816.1.S1_s_at11/1112+1841433..1842707Sulfotransferase domain containing protein, expressed
LOC_Os12g04350OsAffx.30816.1.S1_at10/1112+1841433..1842707Sulfotransferase domain containing protein, expressed
LOC_Os12g04350OsAffx.30816.2.S1_at4/1112+1841433..1842707Sulfotransferase domain containing protein, expressed
LOC_Os12g04350Os.53709.1.S1_at1/1112+1841433..1842707Sulfotransferase domain containing protein, expressed
LOC_Os12g04360Os.11301.1.S1_x_at10/1112+1850395..1851189EF hand family protein, expressed
LOC_Os12g04360Os.11301.1.S1_at9/1112+1850395..1851189EF hand family protein, expressed
LOC_Os12g04370OsAffx.31575.1.S1_x_at11/1112+1852598..1857136GRAS family transcription factor containing protein
LOC_Os12g04380OsAffx.19487.1.S1_x_at11/1112+1858794..1860188GRAS family transcription factor containing protein
LOC_Os12g04390OsAffx.31576.1.S1_at11/1112+1863322..1864544hypothetical protein
LOC_Os12g04400NANA12+1866002..1866811hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008146molecular_functionsulfotransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30816.1.S1_s_at--131--1732Chr12:1842352..1842376 (25 bp)
ACCAGCTCGTTCCTTTCCTTGAGAC
LOC_Os12g04350
OsAffx.30816.1.S1_s_at--989--10672Chr12:1842338..1842362 (25 bp)
TTCCTTGAGACCCAGGTGTTCATCA
LOC_Os12g04350
OsAffx.30816.1.S1_s_at--182--7252Chr12:1842252..1842276 (25 bp)
GTCCCAGTCGTTGCCGGACTCTGTT
LOC_Os12g04350
OsAffx.30816.1.S1_s_at--125--8432Chr12:1841770..1841794 (25 bp)
GGCCGTGGGACATCAACGAGGCACA
LOC_Os12g04350
OsAffx.30816.1.S1_s_at--1036--2052Chr12:1841740..1841764 (25 bp)
ACTTCTGCGATGGTGTCTCACTGTT
LOC_Os12g04350
OsAffx.30816.1.S1_s_at--808--812Chr12:1841731..1841755 (25 bp)
ATGGTGTCTCACTGTTTGGCCCGTA
LOC_Os12g04350
OsAffx.30816.1.S1_s_at--786--10852Chr12:1841716..1841740 (25 bp)
TTGGCCCGTACTGGGAGCATGTCCT
LOC_Os12g04350
OsAffx.30816.1.S1_s_at--899--2772Chr12:1841669..1841693 (25 bp)
AAGAGACCAAGCCAGGTACTCTTCT
LOC_Os12g04350
OsAffx.30816.1.S1_s_at--979--10552Chr12:1841648..1841672 (25 bp)
TTCTTGACCTATGAGGAGCTCACTA
LOC_Os12g04350
OsAffx.30816.1.S1_s_at--312--712Chr12:1841638..1841662 (25 bp)
ATGAGGAGCTCACTACCGATACACT
LOC_Os12g04350
OsAffx.30816.1.S1_s_at--74--9972Chr12:1841625..1841649 (25 bp)
TACCGATACACTCGGCCAACTGAGA
LOC_Os12g04350
Target Sequence 
ACCAGCTCGTTCCTTTCCTTGAGACCCAGGTGTTCATCAAAGACCGGATCCCTGACCTGAGCTCCCTCCCGGCGCCGCGG
CTCTTGATGACGCACATCCCGTCCCAGTCGTTGCCGGACTCTGTTGCCGACTCCGGCTGCAAAGTGGTGTATCTATGCCG
GGATCCCAACAGAAAGTTCAGGCCGTGGGACATCAACGAGGCACATCGACACTTCTGCGATGGTGTCTCACTGTTTGGCC
CGTACTGGGAGCATGTCCTTGGCTATTGGAGGTGGCACACCAAGAGACCAAGCCAGGTACTCTTCTTGACCTATGAGGAG
CTCACTACCGATACACTCGGCCAACTGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30816.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis