Browse Element(s) Details


OsAffx.30887.1.S1_at

Description tigr:9639.m00808
TID=OsAffx.30887.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0859011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08569Os.12282.1.S1_a_at10/1111+4518244..4553813Cycloartenol synthase, putative, expressed
LOC_Os11g08569Os.24410.1.S1_s_at1/1111+4518244..4553813Cycloartenol synthase, putative, expressed
LOC_Os11g08569Os.6502.1.A1_x_at1/1111+4518244..4553813Cycloartenol synthase, putative, expressed
LOC_Os11g08569Os.31929.5.S1_at1/1111+4518244..4553813Cycloartenol synthase, putative, expressed
LOC_Os11g08569Os.6502.1.A1_at1/1111+4518244..4553813Cycloartenol synthase, putative, expressed
LOC_Os11g08590OsAffx.30887.1.S1_at11/1111+4553405..4562257expressed protein
LOC_Os11g08590Os.17282.1.S1_at1/1111+4553405..4562257expressed protein
LOC_Os11g08590Os.27502.1.S1_at1/1111+4553405..4562257expressed protein
LOC_Os11g08590Os.52782.1.S1_at1/1111+4553405..4562257expressed protein
LOC_Os11g08600OsAffx.30888.1.S1_at11/1111+4565018..4567366hypothetical protein
LOC_Os11g08610Os.56258.1.S1_at1/1111+4572750..4579634retrotransposon protein, putative, unclassified
LOC_Os11g08610OsAffx.7914.1.S1_at1/1111+4572750..4579634retrotransposon protein, putative, unclassified
LOC_Os11g08620NANA11+4582384..4585255hypothetical protein
LOC_Os11g08630NANA11+4585475..4586054retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30887.1.S1_at--667--7871Chr11:4560544..4560568 (25 bp)
GGTTTACATTGGATCAGTTTGGTCA
LOC_Os11g08590
OsAffx.30887.1.S1_at--713--1191Chr11:4560529..4560553 (25 bp)
AGTTTGGTCAGGTAATCTTGTTGCA
LOC_Os11g08590
OsAffx.30887.1.S1_at--1016--9651Chr11:4560239..4560263 (25 bp)
TCAGCAGGCCTGAAATTCGTCTCAA
LOC_Os11g08590
OsAffx.30887.1.S1_at--1047--91Chr11:4560148..4560249 (25 bp)
ATTCGTCTCAAGCTGTACATGTAAG
LOC_Os11g08590
OsAffx.30887.1.S1_at--41--9971Chr11:4560113..4560137 (25 bp)
TACCTACGGCGCTCTCGTGGGAGGA
LOC_Os11g08590
OsAffx.30887.1.S1_at--593--4511Chr11:4560081..4560105 (25 bp)
GCCGACACACTAGGCCAGGCTGGTG
LOC_Os11g08590
OsAffx.30887.1.S1_at--960--5531Chr11:4560012..4560036 (25 bp)
GAAACAGGCTTTCCCTTGCAATTGA
LOC_Os11g08590
OsAffx.30887.1.S1_at--577--2791Chr11:4557488..4557509 (22 bp)
AAGAGGGTTCTGATCCATACCTGCC
LOC_Os11g08590
OsAffx.30887.1.S1_at--465--8851Chr11:4557478..4557502 (25 bp)
TGATCCATACCTGCCCAAAATTGAA
LOC_Os11g08590
OsAffx.30887.1.S1_at--407--7031Chr11:4556936..4556960 (25 bp)
GTACAGCATACTCTGGTGCAGCTGG
LOC_Os11g08590
OsAffx.30887.1.S1_at--1071--7991Chr11:4556913..4556937 (25 bp)
GGAGGCTCAATGGTAGGCTAATTCT
LOC_Os11g08590
Target Sequence 
GGTTTACATTGGATCAGTTTGGTCAGGTAATCTTGTTGCAATGCAGAGTTCTAGTCCAAATGTGCAGATCAATTGATAAT
CGATCAGCAGGCCTGAAATTCGTCTCAAGCTGTACATGTAAGGGGGGTTTTATACCTACGGCGCTCTCGTGGGAGGAGGA
AGAGGCCGACACACTAGGCCAGGCTGGTGCAGGAAGAAAGAGGTTGACTGGGCCGCGTCAGAAGGGAGGAAAGGAAACAG
GCTTTCCCTTGCAATTGATGCATCTTAAAGAGGGTTCTGATCCATACCTGCCCAAAATTGAATGCTACGAGCATAACCAT
CTAATCACAAAGGTTGAAGGAGATGGGGGTGATAGTAGCTATACCGACTGGCAGTACAGCATACTCTGGTGCAGCTGGAG
GCTCAATGGTAGGCTAATTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30887.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis