Browse Element(s) Details


OsAffx.30888.1.S1_at

Description tigr:9639.m00809
TID=OsAffx.30888.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0860011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08569Os.12282.1.S1_a_at10/1111+4518244..4553813Cycloartenol synthase, putative, expressed
LOC_Os11g08569Os.24410.1.S1_s_at1/1111+4518244..4553813Cycloartenol synthase, putative, expressed
LOC_Os11g08569Os.6502.1.A1_x_at1/1111+4518244..4553813Cycloartenol synthase, putative, expressed
LOC_Os11g08569Os.31929.5.S1_at1/1111+4518244..4553813Cycloartenol synthase, putative, expressed
LOC_Os11g08569Os.6502.1.A1_at1/1111+4518244..4553813Cycloartenol synthase, putative, expressed
LOC_Os11g08590OsAffx.30887.1.S1_at11/1111+4553405..4562257expressed protein
LOC_Os11g08590Os.17282.1.S1_at1/1111+4553405..4562257expressed protein
LOC_Os11g08590Os.27502.1.S1_at1/1111+4553405..4562257expressed protein
LOC_Os11g08590Os.52782.1.S1_at1/1111+4553405..4562257expressed protein
LOC_Os11g08600OsAffx.30888.1.S1_at11/1111+4565018..4567366hypothetical protein
LOC_Os11g08610Os.56258.1.S1_at1/1111+4572750..4579634retrotransposon protein, putative, unclassified
LOC_Os11g08610OsAffx.7914.1.S1_at1/1111+4572750..4579634retrotransposon protein, putative, unclassified
LOC_Os11g08620NANA11+4582384..4585255hypothetical protein
LOC_Os11g08630NANA11+4585475..4586054retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30888.1.S1_at--1030--9091Chr11:4566094..4566565 (25 bp)
TGCTCGCGTCGAAGGTGTCAACCAT
LOC_Os11g08600
OsAffx.30888.1.S1_at--327--1451Chr11:4566772..4566796 (25 bp)
AGAAGCGTTCAGGACTCTACCGCGA
LOC_Os11g08600
OsAffx.30888.1.S1_at--869--5831Chr11:4566795..4566819 (25 bp)
GACCTAATTGTGATGTTCGCGCTGG
LOC_Os11g08600
OsAffx.30888.1.S1_at--936--7871Chr11:4566872..4566896 (25 bp)
GGTTTTTTGTGTCGCCAGTGTATAC
LOC_Os11g08600
OsAffx.30888.1.S1_at--678--7431Chr11:4566889..4566913 (25 bp)
GTGTATACATCAACTTCGCGCTAAT
LOC_Os11g08600
OsAffx.30888.1.S1_at--868--10631Chr11:4566903..4566927 (25 bp)
TTCGCGCTAATCTCCATGATGGTAG
LOC_Os11g08600
OsAffx.30888.1.S1_at--569--7851Chr11:4566939..4566963 (25 bp)
GGTACCTTGCCAGATGTCTTTAGAT
LOC_Os11g08600
OsAffx.30888.1.S1_at--833--10431Chr11:4566958..4566982 (25 bp)
TTAGATGTCACATGGGCCTCTCGGG
LOC_Os11g08600
OsAffx.30888.1.S1_at--361--5191Chr11:4566982..4567006 (25 bp)
GCAATGGCGTGCTTCAAGGACTTCT
LOC_Os11g08600
OsAffx.30888.1.S1_at--422--8131Chr11:4566999..4567023 (25 bp)
GGACTTCTCTTCAATATCATAGCCT
LOC_Os11g08600
OsAffx.30888.1.S1_at--928--7891Chr11:4567056..4567080 (25 bp)
GGTTCCTTAGTTAAGCTGTCCCAGA
LOC_Os11g08600
Target Sequence 
TGCTCGCGTCGAAGGTGTCAACCATGAAAGACGATAACACTAAGTCTTTTCTGAACAAGGTGAAGGATTTTTGGACTGAG
ATCACAACTAGAGAGTCGCAAGTTGTGAAAAATAACAATGCGGATGAGATTGAAAAAAACAACAAGAAGCGTTCAGGACT
CTACCGCGACCTAATTGTGATGTTCGCGCTGGGTAGTGTATTTTGGAGTGGCGCGAAAAAAGCACTTTCTCAGCTAAAGG
GTTGGGTTTTTTGTGTCGCCAGTGTATACATCAACTTCGCGCTAATCTCCATGATGGTAGGGGCTGCGGCTGGTACCTTG
CCAGATGTCTTTAGATGTCACATGGGCCTCTCGGGCAATGGCGTGCTTCAAGGACTTCTCTTCAATATCATAGCCTTCAA
CTATGAATTATTCACAACCTTGTTGCCCGGTTCCTTAGTTAAGCTGTCCCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30888.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis