Browse Element(s) Details


OsAffx.30896.1.S1_at

Description tigr:9639.m00874
TID=OsAffx.30896.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0923011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09170Os.18115.1.S1_at11/1111+4914681..4919536expressed protein
LOC_Os11g09180Os.16036.1.S1_at11/1111+4919657..4921042expressed protein
LOC_Os11g09190OsAffx.18760.1.S1_at11/1111+4927791..4929665expressed protein
LOC_Os11g09200NANA11+4930463..4933361expressed protein
LOC_Os11g09210OsAffx.7051.1.S1_at10/1111+4934820..4935647hypothetical protein
LOC_Os11g09220OsAffx.30895.1.S1_at11/1111+4936761..4937578ankyrin repeat family protein, putative
LOC_Os11g09230OsAffx.30896.1.S1_at11/1111+4941971..4943680expressed protein
LOC_Os11g09230Os.51889.1.S1_x_at2/1111+4941971..4943680expressed protein
LOC_Os11g09240OsAffx.22492.1.S1_at1/1111+4945372..4951526retrotransposon protein, putative, unclassified
LOC_Os11g09240OsAffx.22492.1.S1_x_at1/1111+4945372..4951526retrotransposon protein, putative, unclassified
LOC_Os11g09250Os.31312.5.S1_x_at5/1111+4952158..4955416retrotransposon protein, putative, unclassified
LOC_Os11g09250Os.31312.2.S1_x_at4/1111+4952158..4955416retrotransposon protein, putative, unclassified
LOC_Os11g09260Os.51889.1.S1_at11/1111+4961051..4962931expressed protein
LOC_Os11g09260Os.51889.1.S1_x_at11/1111+4961051..4962931expressed protein
LOC_Os11g09270OsAffx.30898.1.S1_at10/1111+4964702..4965853hypothetical protein
LOC_Os11g09280Os.10985.1.S1_at11/1111+4967059..4970854Protein disulfide-isomerase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008219biological_processcell death
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0016020cellular_componentmembrane
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30896.1.S1_at--64--4151Chr11:4943107..4943131 (25 bp)
CGCGGCTGGCGATGGTAATAATAAC
LOC_Os11g09230
OsAffx.30896.1.S1_at--62--3091Chr11:4943123..4943147 (25 bp)
AATAATAACAATGGCCGTGGCAACG
LOC_Os11g09230
OsAffx.30896.1.S1_at--1036--10511Chr11:4943249..4943273 (25 bp)
TTCAGCCTGATCTACGCCGGGACGG
LOC_Os11g09230
OsAffx.30896.1.S1_at--728--9711Chr11:4943307..4943331 (25 bp)
TCAAGCACTCCCTGTCGTGGATGCG
LOC_Os11g09230
OsAffx.30896.1.S1_at--817--9311Chr11:4943315..4943339 (25 bp)
TCCCTGTCGTGGATGCGCAAGTCGA
LOC_Os11g09230
OsAffx.30896.1.S1_at--825--471Chr11:4943477..4943501 (25 bp)
ATCTGCGCGTACGTGCTGCAGAGGA
LOC_Os11g09230
OsAffx.30896.1.S1_at--810--7951Chr11:4943508..4943532 (25 bp)
GGATCACGGTGCTCGCGAAGATTGG
LOC_Os11g09230
OsAffx.30896.1.S1_at--166--1771Chr11:4943543..4943567 (25 bp)
ACCGTCGACCTGGTGAAGTCCAATC
LOC_Os11g09230
OsAffx.30896.1.S1_at--449--2851Chr11:4943558..4943582 (25 bp)
AAGTCCAATCTTGTCTACTTGGTCA
LOC_Os11g09230
OsAffx.30896.1.S1_at--290--9891Chr11:4943573..4943597 (25 bp)
TACTTGGTCATCTTCGGTGGGCCCC
LOC_Os11g09230
OsAffx.30896.1.S1_at--165--10571Chr11:4943621..4943645 (25 bp)
TTCTTTGTTTGGAGGCTAGCACCAG
LOC_Os11g09230
Target Sequence 
CGCGGCTGGCGATGGTAATAATAACAATGGCCGTGGCAACGTCGTCGTCGTCGCGGGCTCTCCGGCGCTGTCGGGGAGGT
ACGCCTTCGACGCGTTCATGTACGCCGTGACGGTGGCCTTCACCTGCTCCATGCTCGCCACGTTCAGCCTGATCTACGCC
GGGACGGCGGCGGTGGACTGGAAGATCCGGCACAGGTACTTCAAGCACTCCCTGTCGTGGATGCGCAAGTCGACGAGGAG
CTTGCTGGTGGCCTTCGCGCTCGGGGTGTACCTGGTGCTGGCCCCGGTGTCCCGCGCCACGGCGGTGGGCGTCTGCGTCT
TCACCACCGGCACGCTGCTGTTCAGGAACAGGGAGGTGGTGCGGATGCTGATCTGCGCGTACGTGCTGCAGAGGAGGATG
GGGATCACGGTGCTCGCGAAGATTGGGGTCCCCATCACCGTCGACCTGGTGAAGTCCAATCTTGTCTACTTGGTCATCTT
CGGTGGGCCCCTTTGCACTCCGCTGTGCGTTCTGTTCTTTGTTTGGAGGCTAGCACCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30896.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis