Browse Element(s) Details


OsAffx.30902.1.S1_at

Description tigr:9639.m00905
TID=OsAffx.30902.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0962011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09560NANA11+5116547..5116843hypothetical protein
LOC_Os11g09570OsAffx.18765.1.S1_at11/1111+5117672..5118758hypothetical protein
LOC_Os11g09580NANA11+5121038..5122933F-box domain containing protein
LOC_Os11g09590Os.14731.1.S1_at10/1111+5124780..5127442F-box domain containing protein
LOC_Os11g09600OsAffx.30901.1.S1_at11/1111+5131169..5133396F-box domain containing protein
LOC_Os11g09610OsAffx.18766.1.S1_at11/1111+5134377..5134731hypothetical protein
LOC_Os11g09620OsAffx.30902.1.S1_at11/1111+5136909..5140810F-box domain containing protein
LOC_Os11g09630OsAffx.30903.1.S1_at11/1111+5142712..5145486F-box domain containing protein
LOC_Os11g09640Os.24499.1.S1_at11/1111+5148214..5151946F-box domain containing protein, expressed
LOC_Os11g09640Os.24499.2.S1_at8/1111+5148214..5151946F-box domain containing protein, expressed
LOC_Os11g09640OsAffx.30905.1.S1_at1/1111+5148214..5151946F-box domain containing protein, expressed
LOC_Os11g09650NANA11+5153036..5154375retrotransposon protein, putative, unclassified
LOC_Os11g09660NANA11+5155250..5156647retrotransposon protein, putative, unclassified
LOC_Os11g09670OsAffx.18767.1.S1_at11/1111+5159981..5162213F-box domain containing protein, expressed
LOC_Os11g09680Os.17219.2.S1_s_at11/1111+5164307..5166740expressed protein
LOC_Os11g09680OsAffx.30905.2.S1_at11/1111+5164307..5166740expressed protein
LOC_Os11g09680Os.17219.1.S1_at10/1111+5164307..5166740expressed protein
LOC_Os11g09680Os.17219.2.S1_x_at3/1111+5164307..5166740expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30902.1.S1_at--786--9351Chr11:5139190..5139214 (25 bp)
TCGCACTCGGATTTGTGTCCCAAGT
LOC_Os11g09620
OsAffx.30902.1.S1_at--71--691Chr11:5139146..5139170 (25 bp)
ATGACTATTGGTGCATGACTCCTCT
LOC_Os11g09620
OsAffx.30902.1.S1_at--1119--671Chr11:5139132..5139156 (25 bp)
ATGACTCCTCTGCTTGAGAGCATGC
LOC_Os11g09620
OsAffx.30902.1.S1_at--501--4931Chr11:5139121..5139145 (25 bp)
GCTTGAGAGCATGCCATCATTGGTG
LOC_Os11g09620
OsAffx.30902.1.S1_at--932--7811Chr11:5139082..5139106 (25 bp)
GGTCAACTCTGGATGTTCCGACTTT
LOC_Os11g09620
OsAffx.30902.1.S1_at--144--3031Chr11:5139051..5139075 (25 bp)
AATGCTGGCTCTGGTTATTGTGGTT
LOC_Os11g09620
OsAffx.30902.1.S1_at--1095--2671Chr11:5138986..5139010 (25 bp)
AAGCTGTGTTCTTCTGAAAGGTTTA
LOC_Os11g09620
OsAffx.30902.1.S1_at--1013--6951Chr11:5138722..5138961 (25 bp)
GTAGCTCATTGCAGAACGTTTATTT
LOC_Os11g09620
OsAffx.30902.1.S1_at--324--8491Chr11:5138625..5138649 (25 bp)
TGGCTCCTGAGTTCCACGCATTAAG
LOC_Os11g09620
OsAffx.30902.1.S1_at--219--2411Chr11:5138590..5138614 (25 bp)
AAACACTCGCCAGTTCTTGAGAAGC
LOC_Os11g09620
OsAffx.30902.1.S1_at--829--5511Chr11:5138409..5138433 (25 bp)
GAAATACCGGAGCACCTTAATATAG
LOC_Os11g09620
Target Sequence 
TCGCACTCGGATTTGTGTCCCAAGTCTTGTTTCACTGCAGCTGGATGACTATTGGTGCATGACTCCTCTGCTTGAGAGCA
TGCCATCATTGGTGGAGGCAACCATCACGGTCAACTCTGGATGTTCCGACTTTTGTAGAAATGCTGGCTCTGGTTATTGT
GGTTTTGAGGATTGTAACTACTGTTACCCTATAAATGATGACAGAAGCTGTGTTCTTCTGAAAGGTTTATCAGAAGCAAA
GAATTTGGCATTGGTAGCTCATTGCAGAACGTTTATTTTCAACAGGGACTTGAAATGGTACCCTACATTTAGCAAGCTGA
AGACTTTATTGCTAAATGACCACTGGTGTGTGGCTCCTGAGTTCCACGCATTAAGCTGCATTCTCAAACACTCGCCAGTT
CTTGAGAAGCTCACTCTTCATCTTTTCTCCTGGGGACCTGGACATAAAGTGGAAATGAATGGGAGTTTTGGTATGATGGA
CAGACCAGCTGAAATACCGGAGCACCTTAATATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30902.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis