Browse Element(s) Details


OsAffx.30905.3.S1_at

Description tigr:9639.m00914
TID=OsAffx.30905.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0969011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09630OsAffx.30903.1.S1_at11/1111+5142712..5145486F-box domain containing protein
LOC_Os11g09640Os.24499.1.S1_at11/1111+5148214..5151946F-box domain containing protein, expressed
LOC_Os11g09640Os.24499.2.S1_at8/1111+5148214..5151946F-box domain containing protein, expressed
LOC_Os11g09640OsAffx.30905.1.S1_at1/1111+5148214..5151946F-box domain containing protein, expressed
LOC_Os11g09650NANA11+5153036..5154375retrotransposon protein, putative, unclassified
LOC_Os11g09660NANA11+5155250..5156647retrotransposon protein, putative, unclassified
LOC_Os11g09670OsAffx.18767.1.S1_at11/1111+5159981..5162213F-box domain containing protein, expressed
LOC_Os11g09680Os.17219.2.S1_s_at11/1111+5164307..5166740expressed protein
LOC_Os11g09680OsAffx.30905.2.S1_at11/1111+5164307..5166740expressed protein
LOC_Os11g09680Os.17219.1.S1_at10/1111+5164307..5166740expressed protein
LOC_Os11g09680Os.17219.2.S1_x_at3/1111+5164307..5166740expressed protein
LOC_Os11g09690OsAffx.30905.3.S1_at11/1111+5169041..5171650F-box domain containing protein
LOC_Os11g09690OsAffx.30905.2.S1_at7/1111+5169041..5171650F-box domain containing protein
LOC_Os11g09690Os.17219.2.S1_x_at4/1111+5169041..5171650F-box domain containing protein
LOC_Os11g09690OsAffx.30905.4.S1_at1/1111+5169041..5171650F-box domain containing protein
LOC_Os11g09700Os.32285.1.S1_at2/1111+5173963..5174537Flavonol 3-O-glucosyltransferase, putative
LOC_Os11g09710OsAffx.30906.1.S1_at11/1111+5178191..5179575expressed protein
LOC_Os11g09720Os.46053.2.S1_x_at8/1111+5180249..5183483transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g09730NANA11+5187897..5188196retrotransposon protein, putative, unclassified
LOC_Os11g09740OsAffx.7052.1.S1_at11/1111+5193988..5195544hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30905.3.S1_at--593--8271Chr11:5170942..5170966 (25 bp)
GGCAGGACTCCAGTACTTGAGACGA
LOC_Os11g09690
OsAffx.30905.3.S1_at--692--3451Chr11:5170932..5170956 (25 bp)
CAGTACTTGAGACGATGCCATCACT
LOC_Os11g09690
OsAffx.30905.3.S1_at--733--9691Chr11:5170912..5170936 (25 bp)
TCACTACTTGATGCATTTGTTAGAG
LOC_Os11g09690
OsAffx.30905.3.S1_at--742--6331Chr11:5170903..5170927 (25 bp)
GATGCATTTGTTAGAGTCCTGTACT
LOC_Os11g09690
OsAffx.30905.3.S1_at--747--4951Chr11:5170900..5170924 (25 bp)
GCATTTGTTAGAGTCCTGTACTGGA
LOC_Os11g09690
OsAffx.30905.3.S1_at--743--1231Chr11:5170891..5170915 (25 bp)
AGAGTCCTGTACTGGACTAAAGACT
LOC_Os11g09690
OsAffx.30905.3.S1_at--44--7371Chr11:5170531..5170767 (25 bp)
GTGAACATGGATCGTGCACTAAGTT
LOC_Os11g09690
OsAffx.30905.3.S1_at--1109--6391Chr11:5170522..5170542 (21 bp)
GATCGTGCACTAAGTTGCATTCTTC
LOC_Os11g09690
OsAffx.30905.3.S1_at--661--5771Chr11:5169160..5169184 (25 bp)
GACGAGGACTCTTATGAAAACCCTT
LOC_Os11g09690
OsAffx.30905.3.S1_at--782--5691Chr11:5169154..5169178 (25 bp)
GACTCTTATGAAAACCCTTTTGAAG
LOC_Os11g09690
OsAffx.30905.3.S1_at--1134--5351Chr11:5169121..5169145 (25 bp)
GAAGACTCTTACAAAGGCGAACATG
LOC_Os11g09690
Target Sequence 
GGCAGGACTCCAGTACTTGAGACGATGCCATCACTACTTGATGCATTTGTTAGAGTCCTGTACTGGACTAAAGACTATTG
CATTTGGTCTGACTCTGGGGATTGTGGTCATGAGAACTGTGAATCTTGTTATGGTATCAAGGACAACAATTGTGTGCTTT
TGGAAGGTTTATCTGAAGCTAAGACGTTGGGGCTGATAAGTGAACATGGATCGTGCACTAAGTTGCATTCTTCAACATGC
ACCGGTTCTGGGGAATCTCATTCTTCAGATCTATTCCAAGTTTTTAGTTTTGAGGAAATCGAGATTTTGGAAGAAGATGA
AAATGACCAGGATGAAGAGGAGGAAGATGAGGATGAAGACGAGGACTCTTATGAAAACCCTTTTGAAGACGAAAATGAAG
ACTCTTACAAAGGCGAACATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30905.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis