Browse Element(s) Details


OsAffx.3101.1.S1_at

Description tigr:9630.m05820
TID=OsAffx.3101.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5830011/11membrane-associated salt-inducible protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58240Os.35344.3.S1_x_at9/112+35644121..35649916transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g58240Os.35344.18.S1_x_at9/112+35644121..35649916transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g58240OsAffx.22940.5.S1_x_at3/112+35644121..35649916transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g58250OsAffx.12689.1.S1_s_at11/112+35650923..35654663expressed protein
LOC_Os02g58260Os.4723.1.S1_a_at11/112+35654789..35657708metallo-beta-lactamase family protein, putative, expressed
LOC_Os02g58270Os.23550.1.S2_at5/112+35659297..35661622metallo-beta-lactamase family protein, putative, expressed
LOC_Os02g58280Os.23550.1.S1_at9/112+35662131..35665757expressed protein
LOC_Os02g58290NANA2+35667046..35667417expressed protein
LOC_Os02g58300OsAffx.3101.1.S1_at11/112+35668931..35670484membrane-associated salt-inducible protein, putative, expressed
LOC_Os02g58310OsAffx.24921.1.S1_s_at11/112+35671112..35672185expressed protein
LOC_Os02g58320Os.17922.1.S1_at6/112+35673952..35675461BRICK1, putative, expressed
LOC_Os02g58320Os.13504.1.S1_s_at1/112+35673952..35675461BRICK1, putative, expressed
LOC_Os02g58330Os.54091.1.S1_at11/112+35675760..35677669pentatricopeptide, putative, expressed
LOC_Os02g58340Os.7317.1.S1_a_at11/112+35677642..35682603Peptidase family M3 containing protein, expressed
LOC_Os02g58350OsAffx.24922.1.S1_at11/112+35683378..35684521Two-component response regulator ARR3, putative, expressed
LOC_Os02g58360OsAffx.24923.1.S1_at11/112+35687740..35693548expressed protein
LOC_Os02g58370OsAffx.12690.1.S1_at11/112+35694546..35696195hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3101.1.S1_at--348--6351Chr02:35669507..35669531 (25 bp)
GATGCCAGAGGTGCCGAGGCCGAAC
LOC_Os02g58300
OsAffx.3101.1.S1_at--553--7711Chr02:35669475..35669499 (25 bp)
GGGTGCTGCCCAACTCTGAGACCTA
LOC_Os02g58300
OsAffx.3101.1.S1_at--800--9151Chr02:35669469..35669493 (25 bp)
TGCCCAACTCTGAGACCTACATTAT
LOC_Os02g58300
OsAffx.3101.1.S1_at--249--2011Chr02:35669463..35669487 (25 bp)
ACTCTGAGACCTACATTATGTTGCT
LOC_Os02g58300
OsAffx.3101.1.S1_at--80--9711Chr02:35669427..35669451 (25 bp)
TCAACAAGGGTGTGTTTGCTCCTGC
LOC_Os02g58300
OsAffx.3101.1.S1_at--653--2891Chr02:35669422..35669446 (25 bp)
AAGGGTGTGTTTGCTCCTGCATTGG
LOC_Os02g58300
OsAffx.3101.1.S1_at--612--6851Chr02:35669414..35669438 (25 bp)
GTTTGCTCCTGCATTGGAGGTGTTC
LOC_Os02g58300
OsAffx.3101.1.S1_at--240--6151Chr02:35669398..35669422 (25 bp)
GAGGTGTTCAAGGAATGCCTGCAGA
LOC_Os02g58300
OsAffx.3101.1.S1_at--892--931Chr02:35669388..35669412 (25 bp)
AGGAATGCCTGCAGAACAAGTGGGC
LOC_Os02g58300
OsAffx.3101.1.S1_at--879--4511Chr02:35669363..35669387 (25 bp)
GCCGCCGTTCCAAGCTGTACAAGGA
LOC_Os02g58300
OsAffx.3101.1.S1_at--908--4371Chr02:35669354..35669378 (25 bp)
CCAAGCTGTACAAGGACTGATCAAA
LOC_Os02g58300
Target Sequence 
GATGCCAGAGGTGCCGAGGCCGAACGGAAAGGGGGTGCTGCCCAACTCTGAGACCTACATTATGTTGCTTGAGGGGCTAG
TCAACAAGGGTGTGTTTGCTCCTGCATTGGAGGTGTTCAAGGAATGCCTGCAGAACAAGTGGGCGCCGCCGTTCCAAGCT
GTACAAGGACTGATCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3101.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis