Browse Element(s) Details


OsAffx.31132.1.S1_at

Description tigr:9639.m02294
TID=OsAffx.31132.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2562011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g25570OsAffx.31131.1.S1_at11/1111+14084854..14085562hypothetical protein
LOC_Os11g25590OsAffx.22947.1.S1_x_at7/1111+14092453..14097015retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g25590OsAffx.22947.3.S1_x_at5/1111+14092453..14097015retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g25590OsAffx.22947.5.S1_x_at4/1111+14092453..14097015retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g25590OsAffx.22947.2.S1_x_at4/1111+14092453..14097015retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g25590OsAffx.22947.5.S1_at3/1111+14092453..14097015retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g25600OsAffx.19014.1.S1_at11/1111+14103518..14104348hypothetical protein
LOC_Os11g25610Os.57095.1.S1_at11/1111+14105322..14107027Zinc finger, C2H2 type family protein, expressed
LOC_Os11g25620OsAffx.31132.1.S1_at11/1111+14110431..14111331hypothetical protein
LOC_Os11g25630NANA11+14111868..14113438transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g25640OsAffx.12189.2.S1_at1/1111+14118053..14123671hypothetical protein
LOC_Os11g25650OsAffx.23409.1.S1_s_at1/1111+14135634..14138001hypothetical protein
LOC_Os11g25650Os.29923.1.S1_at1/1111+14135634..14138001hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007623biological_processcircadian rhythm
GO:0009409biological_processresponse to cold
GO:0005634cellular_componentnucleus
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31132.1.S1_at--257--5771Chr11:14110940..14110964 (25 bp)
GACGATCGGCCGAATGTCAGTCGAA
LOC_Os11g25620
OsAffx.31132.1.S1_at--907--471Chr11:14110936..14110960 (25 bp)
ATCGGCCGAATGTCAGTCGAATAGA
LOC_Os11g25620
OsAffx.31132.1.S1_at--241--7111Chr11:14110925..14110949 (25 bp)
GTCAGTCGAATAGAGTCTTCAGCAG
LOC_Os11g25620
OsAffx.31132.1.S1_at--446--7151Chr11:14110911..14110935 (25 bp)
GTCTTCAGCAGCGGCCAGGGAGAAT
LOC_Os11g25620
OsAffx.31132.1.S1_at--597--991Chr11:14110722..14110746 (25 bp)
AGGAGGCGGCGTCATCCAGGGAGGA
LOC_Os11g25620
OsAffx.31132.1.S1_at--998--9331Chr11:14110635..14110659 (25 bp)
TCGGACGGTAGGAGCTAGGCAGCGC
LOC_Os11g25620
OsAffx.31132.1.S1_at--83--3391Chr11:14110589..14110613 (25 bp)
CAGCGGCCGGCTGGTAGGAGACGGT
LOC_Os11g25620
OsAffx.31132.1.S1_at--908--10071Chr11:14110575..14110599 (25 bp)
TAGGAGACGGTGCTGGCCCGAAGAA
LOC_Os11g25620
OsAffx.31132.1.S1_at--1060--5971Chr11:14110527..14110551 (25 bp)
GAGAAAAGCAGCGTCGTGGCCAGTC
LOC_Os11g25620
OsAffx.31132.1.S1_at--650--2431Chr11:14110524..14110548 (25 bp)
AAAAGCAGCGTCGTGGCCAGTCGGC
LOC_Os11g25620
OsAffx.31132.1.S1_at--959--8111Chr11:14110461..14110485 (25 bp)
GGACGGCGGCCGAGCTATTGCAGGT
LOC_Os11g25620
Target Sequence 
GACGATCGGCCGAATGTCAGTCGAATAGAGTCTTCAGCAGCGGCCAGGGAGAATGTGGCGGCGGTCGGCCAGGAGGAGGT
GGCGCCGGCCCGAGAGGAGGCTTTGCCGGCCCGGGAGGATGAGGGTGCCGGCGGTCTGCCAGGAGGAGGAGGTAGCGGCG
CCAGCCCAAGAAGAAGCAGGGCTGGCGCGGGAGTAGGAGGTGGCGGCGATCGGCCGGGAGGAGGCGGCGTCATCCAGGGA
GGAGGAGGTGGCAGCGGTCGGCCTGGAGGAGGCGGCGCCAGCCACGGAGGAGGTAGTGGCGGCGGTCGGACGGTAGGAGC
TAGGCAGCGCCGGGCCGGGAAGAGGAGGTGGCAGCGGCCGGCTGGTAGGAGACGGTGCTGGCCCGAAGAAGAGGAGGAGG
TGGCGGAGGACGCGAGAAAAGCAGCGTCGTGGCCAGTCGGCGGAGGAGTGGCACGGCCAGGAGAGGAGGAGGTGGCGGAG
GACGGCGGCCGAGCTATTGCAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31132.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis