Browse Element(s) Details


OsAffx.31141.1.A1_at

Description tigr:9639.m02374
TID=OsAffx.31141.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g030403/11expressed protein
LOC_Os10g256901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02990OsAffx.22815.2.S1_at11/111+1134043..1134426hypothetical protein
LOC_Os01g02999NANA1+1135682..1136375NA
LOC_Os01g03010OsAffx.10819.1.S1_at10/111+1140359..1141299hypothetical protein
LOC_Os01g03020Os.1070.1.S1_at11/111+1142631..1151896Leucyl-tRNA synthetase, putative, expressed
LOC_Os01g03020OsAffx.30685.1.S1_x_at1/111+1142631..1151896Leucyl-tRNA synthetase, putative, expressed
LOC_Os01g03030Os.38065.1.S1_at11/111+1152052..1155249alanyl-tRNA synthetase, putative, expressed
LOC_Os01g03040Os.1071.1.S1_at10/111+1156955..1161421expressed protein
LOC_Os01g03040OsAffx.31141.1.A1_at3/111+1156955..1161421expressed protein
LOC_Os01g03040OsAffx.31141.1.S1_at2/111+1156955..1161421expressed protein
LOC_Os01g03050Os.54619.1.S1_at1/111+1162673..1164673Oxidoreductase NAD-binding domain containing protein, expressed
LOC_Os01g03060Os.12185.1.S1_at11/111+1165450..1167932expressed protein
LOC_Os01g03070Os.28076.2.S1_at11/111+1168698..1176174transposon protein, putative, unclassified, expressed
LOC_Os01g03070Os.28076.1.S1_at11/111+1168698..1176174transposon protein, putative, unclassified, expressed
LOC_Os01g03070Os.28076.1.S2_at10/111+1168698..1176174transposon protein, putative, unclassified, expressed
LOC_Os01g03080Os.56995.1.S1_at11/111+1178119..1178949expressed protein
LOC_Os01g03090Os.1177.1.S1_a_at11/111+1180214..1183501SLL2, putative, expressed
LOC_Os01g03090Os.45490.1.S1_x_at9/111+1180214..1183501SLL2, putative, expressed
LOC_Os01g03100Os.23963.1.A1_at11/111+1183469..1187815zinc finger family protein, putative, expressed
LOC_Os01g03100Os.30607.1.S1_at10/111+1183469..1187815zinc finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31141.1.A1_at--298--8011Chr11:14756204..14756228 (25 bp)
GGAGGCATCGGTGTCGGCGTCGTTA
NONE
OsAffx.31141.1.A1_at--751--8351Chr11:14756189..14756213 (25 bp)
GGCGTCGTTAGCAGCGTGCGTCGGT
NONE
OsAffx.31141.1.A1_at--459--1131Chr11:14756073..14756097 (25 bp)
AGTCCCTTCCGCTGTAGCGGCGTGG
NONE
OsAffx.31141.1.A1_at--418--2191Chr11:14755990..14756014 (25 bp)
AAATCCGGCGGGAGAAAGGACAGCA
NONE
OsAffx.31141.1.A1_at--357--5571Chr11:14755977..14756001 (25 bp)
GAAAGGACAGCAGCGGCCCGAGATC
NONE
OsAffx.31141.1.A1_at--224--9571Chr11:14755588..14755612 (25 bp)
TCTTCATCAAGCCAGCGTTTGGAGG
NONE
OsAffx.31141.1.A1_at--14--3251Chr11:14755581..14755605 (25 bp)
CAAGCCAGCGTTTGGAGGCTCAAAC
NONE
OsAffx.31141.1.A1_at--1105--2058Chr07:8083562..8083586 (25 bp)
ACTTGGTGAGTTTGTTCCTCACTTT
NONE
OsAffx.31141.1.A1_at--922--6074Chr07:8083569..8083593 (25 bp)
GAGTTTGTTCCTCACTTTGAGCACT
NONE
OsAffx.31141.1.A1_at--436--3758Chr12:10296432..10296453 (22 bp)
CTCACTTTGAGCACTTCAATCTCTT
NONE
OsAffx.31141.1.A1_at--243--3191Chr11:14755240..14755260 (21 bp)
CAATCTCTTGTGTGTAACTTGATGT
NONE
Target Sequence 
GGAGGCATCGGTGTCGGCGTCGTTAGCAGCGTGCGTCGGTGCCGGCGTCGGCGTCGTCGGCGTGTGGCCGGACAGCGCCA
TCCCCTCCACTAGATCCGGTGGGAGGAAGGAGGGCGGCGGCCCGACAGCGCAGTCCCTTCCGCTGTAGCGGCGTGGGGCA
GCGGCGGCGTTTGGCGGGAGAAGCAGCAGCCTCCGGAGGCGCTCTTCCTCCGCCAAATCCGGCGGGAGAAAGGACAGCAG
CGGCCCGAGATCATCCTCCCATCCGATCTTCATCAAGCCAGCGTTTGGAGGCTCAAACGTGGTTGGATTGGCACCAAACT
TGGTGAGTTTGTTCCTCACTTTGAGCACTTCAATCTCTTGTGTGTAACTTGATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31141.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis