Browse Element(s) Details


OsAffx.31308.1.S1_at

Description tigr:9639.m03176
TID=OsAffx.31308.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=protein kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3533011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g35300OsAffx.31235.1.S1_at11/1111+20194742..20200375hypothetical protein
LOC_Os11g35300OsAffx.31235.2.S1_at5/1111+20194742..20200375hypothetical protein
LOC_Os11g35310Os.51241.1.S1_at3/1111+20201419..20201869Phytosulfokine precursor protein containing protein
LOC_Os11g35320Os.54971.1.S1_at11/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320Os.27573.1.S1_at11/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320OsAffx.7300.1.S1_x_at11/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320OsAffx.7300.1.S1_at11/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320OsAffx.24114.2.S1_at1/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35320OsAffx.24114.2.S1_x_at1/1111+20208259..20212913BSD domain containing protein, expressed
LOC_Os11g35330OsAffx.31308.1.S1_at11/1111+20215165..20217219Protein kinase domain containing protein, expressed
LOC_Os11g35340Os.53271.1.S1_at11/1111+20219433..20222337protease, putative, expressed
LOC_Os11g35350Os.10539.1.S1_at11/1111+20222676..20223328expressed protein
LOC_Os11g35360Os.6067.1.S1_at11/1111+20228241..20230243Actin polymerization factor, putative, expressed
LOC_Os11g35370OsAffx.31273.1.S1_at11/1111+20230693..20231388hypothetical protein
LOC_Os11g35370OsAffx.31273.2.S1_at10/1111+20230693..20231388hypothetical protein
LOC_Os11g35370OsAffx.31273.1.S1_x_at10/1111+20230693..20231388hypothetical protein
LOC_Os11g35380OsAffx.31309.1.S1_at11/1111+20232504..20233061hypothetical protein
LOC_Os11g35390Os.57062.1.S1_at11/1111+20233821..20236387Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31308.1.S1_at--699--4491Chr11:20216619..20216643 (25 bp)
GCCGTACGTGCACATGGACGTCAGC
LOC_Os11g35330
OsAffx.31308.1.S1_at--875--7331Chr11:20216626..20216650 (25 bp)
GTGCACATGGACGTCAGCAGCGACA
LOC_Os11g35330
OsAffx.31308.1.S1_at--1053--2111Chr11:20216630..20216654 (25 bp)
ACATGGACGTCAGCAGCGACAGCGT
LOC_Os11g35330
OsAffx.31308.1.S1_at--467--6751Chr11:20216739..20216763 (25 bp)
GTTCACGATGACGAGCAACATCGCC
LOC_Os11g35330
OsAffx.31308.1.S1_at--827--4051Chr11:20216744..20216768 (25 bp)
CGATGACGAGCAACATCGCCGGGAC
LOC_Os11g35330
OsAffx.31308.1.S1_at--262--8551Chr11:20216795..20216819 (25 bp)
TGGAGCACGGCGTCGTGTCGCCCAA
LOC_Os11g35330
OsAffx.31308.1.S1_at--346--671Chr11:20216920..20216944 (25 bp)
ATGAACGCGCTGGCCGGAGACCTCG
LOC_Os11g35330
OsAffx.31308.1.S1_at--1067--2671Chr11:20217058..20217082 (25 bp)
AAGCTGATCGAGAGGTGCGTCCGCC
LOC_Os11g35330
OsAffx.31308.1.S1_at--122--9131Chr11:20217128..20217152 (25 bp)
TGCTGATGTTGCACGGCGTCTCCGG
LOC_Os11g35330
OsAffx.31308.1.S1_at--1129--1931Chr11:20217155..20217179 (25 bp)
ACGGCTGGCACAGCTCGCTGGAGCA
LOC_Os11g35330
OsAffx.31308.1.S1_at--828--2151Chr11:20217164..20217188 (25 bp)
ACAGCTCGCTGGAGCACTACCGGAG
LOC_Os11g35330
Target Sequence 
GCCGTACGTGCACATGGACGTCAGCAGCGACAGCGTCCTCCTCGCCGGCGGCGCCGACCTCCGCGGCAAGCTCCGCAACT
TCGGCGGCGCCAGGGTCATCCGCGGCGGCGGCGGCGAGGCGTTCACGATGACGAGCAACATCGCCGGGACGCGCGGGTAC
ACGGCGCCGGAGTACCTGGAGCACGGCGTCGTGTCGCCCAAGGCCGACGTGTACTCCCTCGGCGTCGTGCTCCTGGAGCT
CGTCACCGGCAAGGGCGTCGACGAGCTGGAGGCCGACGGCGCCGGCGACCCGTTCGCCGGCATGAACGCGCTGGCCGGAG
ACCTCGACGGCGGCAGCGAAGACGACGCGGCGGTGACGAGGAGAATGGAGGAGTTCTTGGACCCGGCGATGGCGGCGACC
GGGAGCAGCTGCCCGCGCGAGGCCGTGGCGATGATGGTGAAGCTGATCGAGAGGTGCGTCCGCCGCGACGCGGCGGCGCG
GCCGGGAATGGGGGAGGTGGCGCAGCATCTGCTGATGTTGCACGGCGTCTCCGGCGACGGCTGGCACAGCTCGCTGGAGC
ACTACCGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31308.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis