Browse Element(s) Details


OsAffx.31339.1.S1_s_at

Description tigr:9639.m03352
TID=OsAffx.31339.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to gene_id:MRG7.14
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3708011/11H/ACA ribonucleoprotein complex subunit 1-like protein 1, putative, expressed
LOC_Os11g067301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37050Os.55420.1.A1_at11/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37050Os.55420.1.A1_x_at11/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37050Os.51985.1.S1_at11/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37050Os.51985.1.S2_at10/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37050Os.18929.1.S1_s_at1/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37050OsAffx.31368.1.S1_x_at1/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37060Os.54585.1.S1_at10/1111+21380293..21381601F-box domain containing protein, expressed
LOC_Os11g37070Os.8620.1.S1_at11/1111+21381848..21387407expressed protein
LOC_Os11g37070Os.55144.1.S1_s_at11/1111+21381848..21387407expressed protein
LOC_Os11g37080OsAffx.31339.1.S1_s_at11/1111+21389097..21391069H/ACA ribonucleoprotein complex subunit 1-like protein 1, putative, expressed
LOC_Os11g37080Os.10298.1.S1_at10/1111+21389097..21391069H/ACA ribonucleoprotein complex subunit 1-like protein 1, putative, expressed
LOC_Os11g37090Os.54176.1.S1_at11/1111+21391552..21395899Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os11g37100Os.49949.1.S1_at11/1111+21405019..21407820expressed protein
LOC_Os11g37100Os.49949.1.S2_at11/1111+21405019..21407820expressed protein
LOC_Os11g37110OsAffx.19207.1.S1_at10/1111+21408319..21409548hypothetical protein
LOC_Os11g37120OsAffx.19208.1.S1_at11/1111+21411589..21414660Nucleolar protein NOP5, putative
LOC_Os11g37120Os.51660.1.S1_at1/1111+21411589..21414660Nucleolar protein NOP5, putative

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Gene Ontology Classification
GO idTypeName
GO:0001510biological_processRNA methylation
GO:0006364biological_processrRNA processing
GO:0007623biological_processcircadian rhythm
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
GO:0030515molecular_functionsnoRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31339.1.S1_s_at--126--6151Chr11:21389446..21389470 (25 bp)
GAGGTGTCGACGTTCATGCACGCGT
LOC_Os11g37080
OsAffx.31339.1.S1_s_at--303--3972Chr11:21389483..21389507 (25 bp)
CGGTGACGAAGCTGACGAACGAGAA
LOC_Os11g37080
OsAffx.31339.1.S1_s_at--947--3851Chr11:21389494..21389518 (25 bp)
CTGACGAACGAGAAGGTGCCCTACT
LOC_Os11g37080
OsAffx.31339.1.S1_s_at--243--4051Chr11:21389502..21389526 (25 bp)
CGAGAAGGTGCCCTACTTCAACGCG
LOC_Os11g37080
OsAffx.31339.1.S1_s_at--309--3211Chr11:21389544..21389568 (25 bp)
CAAGACCCAGATCGGCAAGGTCGAC
LOC_Os11g37080
OsAffx.31339.1.S1_s_at--727--1811Chr11:21389588..21390097 (25 bp)
ACGAATCCCTTTTCTCCATTAAGAT
LOC_Os11g37080
OsAffx.31339.1.S1_s_at--196--7671Chr11:21390105..21390129 (25 bp)
GGGATCATTGCAACTTCATACAGTG
LOC_Os11g37080
OsAffx.31339.1.S1_s_at--248--9871Chr11:21390123..21390147 (25 bp)
TACAGTGAAGGCGATAAGTTCTACA
LOC_Os11g37080
OsAffx.31339.1.S1_s_at--1055--9771Chr11:21390137..21390161 (25 bp)
TAAGTTCTACATCGACCCCATGAAG
LOC_Os11g37080
OsAffx.31339.1.S1_s_at--575--8991Chr11:21390157..21390181 (25 bp)
TGAAGCTTTTGCCTCTCTCACGCTT
LOC_Os11g37080
OsAffx.31339.1.S1_s_at--129--9571Chr11:21390181..21390659 (25 bp)
TCTTGCCACAGCCAAAGGGCCAAAG
LOC_Os11g37080
Target Sequence 
GAGGTGTCGACGTTCATGCACGCGTGCGAGGGGGACGCGGTGACGAAGCTGACGAACGAGAAGGTGCCCTACTTCAACGC
GCCCATCTACCTCCAGAACAAGACCCAGATCGGCAAGGTCGACGAGATCTTCGGCCCCATCAACGAATCCCTTTTCTCCA
TTAAGATGCTGGAGGGGATCATTGCAACTTCATACAGTGAAGGCGATAAGTTCTACATCGACCCCATGAAGCTTTTGCCT
CTCTCACGCTTCTTGCCACAGCCAAAGGGCCAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31339.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis