Browse Element(s) Details


OsAffx.31574.2.S1_at

Description tigr:9640.m00347
TID=OsAffx.31574.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Sulfotransferase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0432011/11Sulfotransferase domain containing protein
LOC_Os11g045308/11Sulfotransferase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04260Os.26862.1.S1_at11/1112+1801715..1806043saccharopine dehydrogenase family protein, expressed
LOC_Os12g04260Os.26862.3.S1_a_at11/1112+1801715..1806043saccharopine dehydrogenase family protein, expressed
LOC_Os12g04260Os.26862.1.S1_s_at8/1112+1801715..1806043saccharopine dehydrogenase family protein, expressed
LOC_Os12g04260Os.10427.1.S1_a_at2/1112+1801715..1806043saccharopine dehydrogenase family protein, expressed
LOC_Os12g04270Os.5332.1.S1_at10/1112+1806669..1810157Cytochrome C biogenesis protein transmembrane region containing protein, expressed
LOC_Os12g04270Os.24981.1.A1_at1/1112+1806669..1810157Cytochrome C biogenesis protein transmembrane region containing protein, expressed
LOC_Os12g04280OsAffx.19484.1.S1_at11/1112+1812870..1814809hypothetical protein
LOC_Os12g04290Os.26409.1.S1_a_at11/1112+1816628..1820688TAP42-like family protein, expressed
LOC_Os12g04290Os.26409.2.S1_s_at11/1112+1816628..1820688TAP42-like family protein, expressed
LOC_Os12g04290Os.26409.3.S1_s_at11/1112+1816628..1820688TAP42-like family protein, expressed
LOC_Os12g04300OsAffx.31574.1.S1_at9/1112+1821392..1822197Sulfotransferase domain containing protein
LOC_Os12g04310OsAffx.19542.3.S1_x_at10/1112+1823634..1827469retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g04320OsAffx.31574.2.S1_at11/1112+1829961..1830974Sulfotransferase domain containing protein
LOC_Os12g04330OsAffx.7481.1.S1_at11/1112+1833700..1834413hypothetical protein
LOC_Os12g04340OsAffx.19485.2.S1_at11/1112+1836950..1837789Sulfotransferase domain containing protein
LOC_Os12g04340OsAffx.19485.1.S1_s_at11/1112+1836950..1837789Sulfotransferase domain containing protein
LOC_Os12g04340OsAffx.3105.1.S1_at1/1112+1836950..1837789Sulfotransferase domain containing protein
LOC_Os12g04350OsAffx.30816.1.S1_s_at11/1112+1841433..1842707Sulfotransferase domain containing protein, expressed
LOC_Os12g04350OsAffx.30816.1.S1_at10/1112+1841433..1842707Sulfotransferase domain containing protein, expressed
LOC_Os12g04350OsAffx.30816.2.S1_at4/1112+1841433..1842707Sulfotransferase domain containing protein, expressed
LOC_Os12g04350Os.53709.1.S1_at1/1112+1841433..1842707Sulfotransferase domain containing protein, expressed
LOC_Os12g04360Os.11301.1.S1_x_at10/1112+1850395..1851189EF hand family protein, expressed
LOC_Os12g04360Os.11301.1.S1_at9/1112+1850395..1851189EF hand family protein, expressed
LOC_Os12g04370OsAffx.31575.1.S1_x_at11/1112+1852598..1857136GRAS family transcription factor containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0008146molecular_functionsulfotransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31574.2.S1_at--380--9291Chr12:1830503..1830527 (25 bp)
TCCGTCGCTACATCCGGTTGTAAGG
LOC_Os12g04320
OsAffx.31574.2.S1_at--839--1431Chr12:1830310..1830334 (25 bp)
AGAAGCCGAACCAGGTACTCTTCTT
LOC_Os12g04320
OsAffx.31574.2.S1_at--88--1252Chr12:1830250..1830274 (25 bp)
AGTTGAGACGCCTTGCCGAGTTTGT
LOC_Os12g04320
OsAffx.31574.2.S1_at--808--6072Chr12:1830233..1830257 (25 bp)
GAGTTTGTCGGATGTCCATTCACGA
LOC_Os12g04320
OsAffx.31574.2.S1_at--469--132Chr12:1830216..1830240 (25 bp)
ATTCACGACGGAGGAGCAGAAGCAC
LOC_Os12g04320
OsAffx.31574.2.S1_at--1073--6212Chr12:1830170..1830194 (25 bp)
GAGGCCTGCGCATTGGAGAACATGT
LOC_Os12g04320
OsAffx.31574.2.S1_at--797--5492Chr12:1830153..1830177 (25 bp)
GAACATGTCCGGATTAGAGGTGAAT
LOC_Os12g04320
OsAffx.31574.2.S1_at--874--5252Chr12:1830132..1830156 (25 bp)
GAATCGGTCGGGAACGATCACCATA
LOC_Os12g04320
OsAffx.31574.2.S1_at--111--6452Chr12:1830117..1830141 (25 bp)
GATCACCATAGTCGATAGCACTGTC
LOC_Os12g04320
OsAffx.31574.2.S1_at--950--291Chr12:1830103..1830127 (25 bp)
ATAGCACTGTCCCAAACAACACGTT
LOC_Os12g04320
OsAffx.31574.2.S1_at--31--6612Chr12:1830056..1830080 (25 bp)
GATTGGAGAAACCACCTGACGCCAG
LOC_Os12g04320
Target Sequence 
TCCGTCGCTACATCCGGTTGTAAGGTGGTGTACCTTTGTCGGGACCCCAAGGACTGCTTCGTCTCGCTCTGGCACTTTTG
GAACAGGTTCATGCCGTGGGACATCGACGAGGCGCACCGGCAATTCTGCGATGGCGTCTCGCAGTTTGGGCCGTTCTGGG
AGCATATCCTCGGCTACTGGAGGTGGCACGTCGAGAAGCCGAACCAGGTACTCTTCTTGACCTACGAGGAGCTCGCCGCC
GACACACTCGGCCAGTTGAGACGCCTTGCCGAGTTTGTCGGATGTCCATTCACGACGGAGGAGCAGAAGCACGGGGTGGA
TAGGAATATCGTGGAGGCCTGCGCATTGGAGAACATGTCCGGATTAGAGGTGAATCGGTCGGGAACGATCACCATAGTCG
ATAGCACTGTCCCAAACAACACGTTCTTCCGGCGTGGCGTGGTCGGAGATTGGAGAAACCACCTGACGCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31574.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis