Browse Element(s) Details


OsAffx.3169.1.S1_s_at

Description tigr:9631.m00733
TID=OsAffx.3169.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0797011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07930Os.43567.1.S1_x_at3/113+4027114..4030675retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g07930Os.38172.1.S1_x_at2/113+4027114..4030675retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g07930Os.53217.1.S1_x_at2/113+4027114..4030675retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g07930OsAffx.11375.1.S1_at1/113+4027114..4030675retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g07940OsAffx.12775.1.S1_at10/113+4036278..4040425AP2 domain containing protein, expressed
LOC_Os03g07950Os.54025.1.S1_at11/113+4045270..4046191expressed protein
LOC_Os03g07960Os.16997.1.S1_at9/113+4048971..4051471expressed protein
LOC_Os03g07970OsAffx.3169.1.S1_s_at11/113+4052698..4056735expressed protein
LOC_Os03g07970Os.54386.1.S1_at11/113+4052698..4056735expressed protein
LOC_Os03g07970OsAffx.3169.1.S1_at10/113+4052698..4056735expressed protein
LOC_Os03g07980Os.53600.1.S1_at11/113+4058448..4059167expressed protein
LOC_Os03g07990Os.11182.1.S1_at11/113+4060778..4064152GCN5-related N-acetyltransferase, putative, expressed
LOC_Os03g08000Os.18248.1.S1_at10/113+4069116..4073025C3HC4 zinc finger containing protein, putative, expressed
LOC_Os03g08010Os.12625.1.S1_a_at11/113+4074305..4076350Elongation factor 1-alpha, putative
LOC_Os03g08010Os.12625.1.S1_x_at9/113+4074305..4076350Elongation factor 1-alpha, putative
LOC_Os03g08010Os.12625.4.S1_x_at8/113+4074305..4076350Elongation factor 1-alpha, putative
LOC_Os03g08010Os.12625.6.S1_x_at7/113+4074305..4076350Elongation factor 1-alpha, putative
LOC_Os03g08010Os.12625.2.S1_x_at6/113+4074305..4076350Elongation factor 1-alpha, putative
LOC_Os03g08010Os.57463.1.S1_x_at3/113+4074305..4076350Elongation factor 1-alpha, putative
LOC_Os03g08020Os.12625.1.S1_a_at11/113+4079852..4081790Elongation factor 1-alpha, putative, expressed
LOC_Os03g08020Os.12625.1.S1_x_at9/113+4079852..4081790Elongation factor 1-alpha, putative, expressed
LOC_Os03g08020Os.12625.4.S1_x_at8/113+4079852..4081790Elongation factor 1-alpha, putative, expressed
LOC_Os03g08020Os.12625.6.S1_x_at7/113+4079852..4081790Elongation factor 1-alpha, putative, expressed
LOC_Os03g08020Os.12625.2.S1_x_at6/113+4079852..4081790Elongation factor 1-alpha, putative, expressed
LOC_Os03g08020Os.57463.1.S1_x_at2/113+4079852..4081790Elongation factor 1-alpha, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3169.1.S1_s_at--792--2311Chr03:4055492..4055516 (25 bp)
AAAGGTTCTCCGTTCTCTGTTCAGA
LOC_Os03g07970
OsAffx.3169.1.S1_s_at--511--8791Chr03:4055475..4055499 (25 bp)
TGTTCAGATTGTCGTCCCTGTGCAT
LOC_Os03g07970
OsAffx.3169.1.S1_s_at--328--7911Chr03:4054709..4054733 (25 bp)
GGTTGTCATTCCCAATCCTGTGGGC
LOC_Os03g07970
OsAffx.3169.1.S1_s_at--1094--3031Chr03:4054696..4054720 (25 bp)
AATCCTGTGGGCGAGTACACCAAGA
LOC_Os03g07970
OsAffx.3169.1.S1_s_at--369--5591Chr03:4054542..4054566 (25 bp)
GAAATCATCTTCAGGACCGTGTTCT
LOC_Os03g07970
OsAffx.3169.1.S1_s_at--620--6711Chr03:4054522..4054546 (25 bp)
GTTCTGGAAGCGCTACGGACTCAAG
LOC_Os03g07970
OsAffx.3169.1.S1_s_at--1058--1151Chr03:4053844..4053868 (25 bp)
AGTACAGGTCACTCGTTCAGTCCAG
LOC_Os03g07970
OsAffx.3169.1.S1_s_at--154--3451Chr03:4053817..4053841 (25 bp)
CAGTATCATCTCTGCATTCCAATAT
LOC_Os03g07970
OsAffx.3169.1.S1_s_at--570--1331Chr03:4053206..4053230 (25 bp)
AGAGTCAACCAGTTATCCGTCAGCA
LOC_Os03g07970
OsAffx.3169.1.S1_s_at--215--3011Chr03:4053013..4053037 (25 bp)
AATGACGACGGTTGCTGATTCCCAC
LOC_Os03g07970
OsAffx.3169.1.S1_s_at--274--10631Chr03:4052995..4053019 (25 bp)
TTCCCACGGCGTTTCGAAGATTTAT
LOC_Os03g07970
Target Sequence 
AAAGGTTCTCCGTTCTCTGTTCAGATTGTCGTCCCTGTGCATTCTCCAAGTACCTCAAGATTACCTCAGGGGTTGTCATT
CCCAATCCTGTGGGCGAGTACACCAAGAGAAATCATCTTCAGGACCGTGTTCTGGAAGCGCTACGGACTCAAGACTCGTT
GAATGAACTTGACGATTGCTCAGAATTTGAGAGGTCAAACTTCGAGGAGTACAGGTCACTCGTTCAGTCCAGTCCAGTAT
CATCTCTGCATTCCAATATTCAGAATGTTGCTGGATATTATGCTTCTAATGATATTGAGAAAGCGGCCTCCAAAGCTGTG
AATATTTGCTTACGAACTTTAGCTCAGCTTGTGAGTGGCAATGTCTTTCTATCTCTTAGAGCTTCGGAAGACCTGAATCA
GGTATTACAAGAGTCAACCAGTTATCCGTCAGCACATGCTGAAGCCATCAGGAGCAAAATCAATGTTGTCCTTAGAGCCA
TAGGCAGCCTCGTGCAAACTGTGCCAGTGCAACCAAGAATGACGACGGTTGCTGATTCCCACGGCGTTTCGAAGATTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3169.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis