Browse Element(s) Details


OsAffx.31811.5.S1_at

Description tigr:9639.m01729
TID=OsAffx.31811.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc knuckle, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1870011/11Zinc knuckle family protein
LOC_Os09g070006/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g115304/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g18680OsAffx.31042.1.S1_at11/1111+10549782..10550411hypothetical protein
LOC_Os11g18690OsAffx.31043.1.S1_at11/1111+10553377..10560854Glycosyl hydrolase family 3 C terminal domain containing protein
LOC_Os11g18690OsAffx.2089.1.S1_at1/1111+10553377..10560854Glycosyl hydrolase family 3 C terminal domain containing protein
LOC_Os11g18700OsAffx.31811.5.S1_at11/1111+10567069..10571138Zinc knuckle family protein
LOC_Os11g18700OsAffx.31811.3.S1_x_at6/1111+10567069..10571138Zinc knuckle family protein
LOC_Os11g18700OsAffx.31811.1.S1_at2/1111+10567069..10571138Zinc knuckle family protein
LOC_Os11g18710OsAffx.31045.1.S1_at11/1111+10576444..10578387hypothetical protein
LOC_Os11g18720NANA11+10578942..10582691retrotransposon protein, putative, unclassified
LOC_Os11g18730Os.27453.1.S1_at11/1111+10587515..10593743Glycosyl hydrolase family 3 C terminal domain containing protein, expressed
LOC_Os11g18740OsAffx.7149.1.S1_at8/1111+10595759..10596947hypothetical protein
LOC_Os11g18740OsAffx.17242.1.S1_at1/1111+10595759..10596947hypothetical protein
LOC_Os11g18740Os.37711.3.S1_x_at1/1111+10595759..10596947hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31811.5.S1_at--55--8814Chr11:10568677..10568701 (25 bp)
TGTTCGCCACACACTAGCACAAAGG
LOC_Os11g18700
OsAffx.31811.5.S1_at--895--6252Chr11:10570904..10570928 (25 bp)
GATGGTGCACATGCTAAACCAGATT
LOC_Os11g18700
OsAffx.31811.5.S1_at--987--6451Chr11:10570979..10571003 (25 bp)
GATCAAGGAGTTAAGCATATTCGTG
LOC_Os11g18700
OsAffx.31811.5.S1_at--260--114Chr11:10570997..10571021 (25 bp)
ATTCGTGATGGGAAAGCTTAAGTTC
LOC_Os11g18700
OsAffx.31811.5.S1_at--900--4897Chr11:10571012..10571036 (25 bp)
GCTTAAGTTCTTTCTCGGGATTGGA
LOC_Os11g18700
OsAffx.31811.5.S1_at--628--6736Chr11:10571018..10571042 (25 bp)
GTTCTTTCTCGGGATTGGAATCAAG
LOC_Os11g18700
OsAffx.31811.5.S1_at--1126--9476Chr11:10571024..10571048 (25 bp)
TCTCGGGATTGGAATCAAGCAAATC
LOC_Os11g18700
OsAffx.31811.5.S1_at--249--957Chr11:10571050..10571074 (25 bp)
AGGAAGAGATTTCATCAAGCCCATC
LOC_Os11g18700
OsAffx.31811.5.S1_at--478--9711Chr11:10571064..10571088 (25 bp)
TCAAGCCCATCAATGTGCCAAGTTC
LOC_Os11g18700
OsAffx.31811.5.S1_at--908--1651Chr11:10571067..10571091 (25 bp)
AGCCCATCAATGTGCCAAGTTCAAA
LOC_Os11g18700
OsAffx.31811.5.S1_at--828--1211Chr11:10571084..10571108 (25 bp)
AGTTCAAATTGGCTTCAAGATATCA
LOC_Os11g18700
Target Sequence 
TGTTCGCCACACACTAGCACAAAGGCCATTTGGGTGCCTAAGTCTCTTGTGACTAACCTTTATGGATCCAATGTTTTTGG
GGACCAAAATGTGCTAAAAAGGAAGATGGTGCACATGCTAAACCAGATTGGGTCATGGCCTTACAAGAAGATCACAAGCA
CTATCAGGACGCAGACTGTGATCAAGGAGTTAAGCATATTCGTGATGGGAAAGCTTAAGTTCTTTCTCGGGATTGGAATC
AAGCAAATCAAGGAAGAGATTTCATCAAGCCCATCAATGTGCCAAGTTCAAATTGGCTTCAAGATATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31811.5.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis