Browse Element(s) Details


OsAffx.31860.1.S1_at

Description tigr:9640.m02298
TID=OsAffx.31860.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=cyclin-dependent protein kinase Cdk2, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2442011/11Protein kinase domain containing protein
LOC_Os12g2414011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g24390OsAffx.31864.1.S1_at11/1112+13911270..13913324von Willebrand factor type A domain containing protein, expressed
LOC_Os12g24390Os.9218.1.S1_at10/1112+13911270..13913324von Willebrand factor type A domain containing protein, expressed
LOC_Os12g24400OsAffx.30941.5.S1_x_at8/1112+13914749..13917908transposon protein, putative, unclassified
LOC_Os12g24400OsAffx.30941.1.S1_x_at7/1112+13914749..13917908transposon protein, putative, unclassified
LOC_Os12g24400OsAffx.30941.9.S1_x_at4/1112+13914749..13917908transposon protein, putative, unclassified
LOC_Os12g24400OsAffx.30941.2.S1_x_at3/1112+13914749..13917908transposon protein, putative, unclassified
LOC_Os12g24410OsAffx.29755.4.S1_x_at11/1112+13922141..13929900hypothetical protein
LOC_Os12g24410OsAffx.29755.2.S1_x_at8/1112+13922141..13929900hypothetical protein
LOC_Os12g24410OsAffx.29755.5.S1_x_at6/1112+13922141..13929900hypothetical protein
LOC_Os12g24410OsAffx.29755.1.S1_s_at5/1112+13922141..13929900hypothetical protein
LOC_Os12g24410OsAffx.29755.3.S1_x_at2/1112+13922141..13929900hypothetical protein
LOC_Os12g24420OsAffx.31860.1.S1_at11/1112+13933879..13935553Protein kinase domain containing protein
LOC_Os12g24430NANA12+13936133..13939099retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g24450Os.26894.1.A1_x_at2/1112+13947486..13953616retrotransposon protein, putative, unclassified, expressed
LOC_Os12g24450OsAffx.15069.1.S1_at1/1112+13947486..13953616retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0030154biological_processcell differentiation
GO:0005634cellular_componentnucleus
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31860.1.S1_at--423--2612Chr12:13737300..13737324 (25 bp)
AACCCGATCGGCACGCGGTGGTACT
LOC_Os12g24140
OsAffx.31860.1.S1_at--130--572Chr12:13737336..13737360 (25 bp)
ATCCTCCTCGGGTCGACGGACTACG
LOC_Os12g24140
OsAffx.31860.1.S1_at--933--10652Chr12:13737426..13737450 (25 bp)
TTCCGCGGGAGCTCGGACAGGGAGC
LOC_Os12g24140
OsAffx.31860.1.S1_at--108--5772Chr12:13737468..13737492 (25 bp)
GACGTCCTCGGCGTGAACGACATCA
LOC_Os12g24140
OsAffx.31860.1.S1_at--25--9452Chr12:13737475..13737499 (25 bp)
TCGGCGTGAACGACATCAAGCGGTG
LOC_Os12g24140
OsAffx.31860.1.S1_at--874--7952Chr12:13737531..13737555 (25 bp)
GGATGCGGGCCGGACAGCTTTCTTC
LOC_Os12g24140
OsAffx.31860.1.S1_at--996--8652Chr12:13737534..13737558 (25 bp)
TGCGGGCCGGACAGCTTTCTTCGTG
LOC_Os12g24140
OsAffx.31860.1.S1_at--172--10332Chr12:13737549..13737573 (25 bp)
TTTCTTCGTGGCTTCTTCCCATCTC
LOC_Os12g24140
OsAffx.31860.1.S1_at--148--8952Chr12:13737667..13737691 (25 bp)
TGACGGTGGCGCAAGCACTCCGGCA
LOC_Os12g24140
OsAffx.31860.1.S1_at--866--2712Chr12:13737679..13737703 (25 bp)
AAGCACTCCGGCACCGGTGGTTCAA
LOC_Os12g24140
OsAffx.31860.1.S1_at--918--1992Chr12:13737683..13737707 (25 bp)
ACTCCGGCACCGGTGGTTCAAGGAG
LOC_Os12g24140
Target Sequence 
AACCCGATCGGCACGCGGTGGTACTGCGCGCCGGAGATCCTCCTCGGGTCGACGGACTACGACGAGCGCGTCGACGCGTG
GTCGCTCGGCTGCATCATGGCGGAGCTCCTCGCCNGGAAGCCGCTGTTCCGCGGGAGCTCGGACAGGGAGCAGCTCGGCG
AGATCGTCGACGTCCTCGGCGTGAACGACATCAAGCGGTGGCGAGGCTACAAGGGGCAGCGGCTGCTGGGAGGATGCGGG
CCGGACAGCTTTCTTCGTGGCTTCTTCCCATCTCCGGCCGACGCCAGGATGCTCCGCCGGCCNCCATTGTCGGAGGCTGG
GTTCGAGGTGTTGAGTGGACTTCTGACGTGCAACCCGGAGAAGAGGATGACGGTGGCGCAAGCACTCCGGCACCGGTGGT
TCAAGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31860.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis